Journals / Turkish Journal of Botany / 2010 / Cilt: 34 - Sayı: 3

Internal transcribed spacer (ITS) polymorphism in the wild Primula (Primulaceae) taxa of Turkey

Pages
147–157
Publication Date
2010-03-01
DOI
—
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⚡ TL;DR(Too Long; Didn't Read)

As a result, it was determined that the dendrograms obtained by NJ and MP analysis are concordant with the traditional taxonomical order at subgeneric level.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:Twenty-three populations belonging to 10 wild Primula L. (Primulaceae) taxa of Turkey, some of which are morphologically quite similar, were investigated based on nrDNA ITS regions.
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Key Findings & Data:The plant materials were collected from different geographical areas of Anatolia in vegetation periods of 2005 and 2006.
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Conclusion & Impact:As a result, it was determined that the dendrograms obtained by NJ and MP analysis are concordant with the traditional taxonomical order at subgeneric level.
🔬Design:Research Article
📍Scope:2005 · 23 specimens
⚙️Variables:Key words: Turkey · ITS PCR · nrDNA

Abstract

Twenty-three populations belonging to 10 wild Primula L. (Primulaceae) taxa of Turkey, some of which are morphologically quite similar, were investigated based on nrDNA ITS regions. The plant materials were collected from different geographical areas of Anatolia in vegetation periods of 2005 and 2006. Total genomic DNAs were isolated from the healthy leaves of each population. The entire ITS regions of the populations were amplified by universal primers with the aid of a polymerase chain reaction (PCR), and then the PCR products were sequenced. Neighbour-Joining (NJ) and Maximum Parsimony (MP) trees were constructed in order to identify the relationships among Primula taxa. According to ITS data, 724 characters were determined among the aligned sequences of the populations and the divergence values were found to be between 0.0% and 20.9%. ITS sequences from 23 specimens provided a number of variable and sufficient characters to explore the relationships. As a result, it was determined that the dendrograms obtained by NJ and MP analysis are concordant with the traditional taxonomical order at subgeneric level.

Özet

Twenty-three populations belonging to 10 wild Primula L. (Primulaceae) taxa of Turkey, some of which are morphologically quite similar, were investigated based on nrDNA ITS regions. The plant materials were collected from different geographical areas of Anatolia in vegetation periods of 2005 and 2006. Total genomic DNAs were isolated from the healthy leaves of each population. The entire ITS regions of the populations were amplified by universal primers with the aid of a polymerase chain reaction (PCR), and then the PCR products were sequenced. Neighbour-Joining (NJ) and Maximum Parsimony (MP) trees were constructed in order to identify the relationships among Primula taxa. According to ITS data, 724 characters were determined among the aligned sequences of the populations and the divergence values were found to be between 0.0% and 20.9%. ITS sequences from 23 specimens provided a number of variable and sufficient characters to explore the relationships. As a result, it was determined that the dendrograms obtained by NJ and MP analysis are concordant with the traditional taxonomical order at subgeneric level.

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Cite This Article

GÜLTEPE, M., UZUNER, U., COŞKUNÇELEBİ, K. (2010). Internal transcribed spacer (ITS) polymorphism in the wild Primula (Primulaceae) taxa of Turkey. Turkish Journal of Botany, Cilt: 34 - Sayı: 3, 147–157. https://ajindex.com/articles/183391

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References (10)

  1. Abou-El-Enain MM (2005). Chromosomal variability in the genus Primula (Primulaceae). Bot J Linn Soc 150: 211–219. Anderberg AA & Stahl B (1995). Phylogenetic interrelationships in the Primulales, with special emphasis on the family circumscriptions. Can J Botany 73: 1699–1730. Aston DL & Bradshaw AD (1966). Evolution in closely adjacent populations. Part II. Agrostis stolonifera in maritime habitats. Heredity 37: 9–25. Bain JF & Jansen RK (1995). A phylogenetic analysis of the aureoid Senecio (Asteraceae) complex based on ITS sequence data. Plant Syst Evol 195: 209–219.
  2. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS & Donoghue MJ (1995). The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Mo Bot Gard 82: 247–277.
  3. Barrett SCH, Jesson LK & Baker AM (2000). The evolution and function of Stylar polymorphisms in flowering plants. Ann Bot- London 85: 253–265.
  4. Beyazoğlu O (1989). Kuzey Doğu Anadolu Bölgesi’nde yayılış gösteren bazı Primulaceae taksonları üzerinde anatomik çalışmalar. Turk J Bot 3: 3–16.
  5. Conti E, Suring E, Boyd D, Jorgensen J, Grant J & Kelso S (2000). Phylogenetic relationships and character evolution in Primula L.: the usefulness of ITS data. Plant Biosyst 134: 385–392. Doyle JJ & Dolye JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11–15.
  6. Ekim T, Koyuncu M, Vural M, Duman H, Aytaç Z & Adıgüzel N (2000). Red data book of Turkish plants. Ankara:
  7. Barışcan Ofset. Felsenstein J (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783–791.
  8. Gravendeel B, Chase MW & de Vogel EF (2001). Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPs, matK, and nuclear ribosomal ITS sequences: Evidence for polyphyly. Am J Bot 88: 1915–1927.
  9. Hall, TA (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser 41: 95–98. Hayırlıoğlu-Ayaz S & İnceer H (2003). Chromosome counts of some Primula L. species (Primulaceae). Biol Brat 58: 45–48. Hu CM & Kelso S (1996). Primulaceae. In: Wu CY & Raven PH (eds.) Flora of China, Myrsinaceae Through Loganiaceae, 15, pp. 118– 119. Beijing: Science Press.
  10. Kalman K, Medvegy A & Erzsebet M (2004). Pattern of the floral variation in the hybrid zone of two Distylous Primula species. Flora 199: 218–227. Kovtonyuk NK & Goncharov AA (2009). Phylogenetic relationships in th