SavedAdd your journal

Journals / Selcuk Journal of Agriculture and Food Sciences / 2026 / Cilt: 38 Sayı: 2

Drawing the Phylogenetic Tree of Tenothrips species Using MOLE-BLAST: A Phylogenetic Analysis Approach

İnci Şahin Negiş(SELÇUK ÜNİVERSİTESİ)0000-0002-4481-2807
Pages
226–230
Publication Date
2024-08-22
🏛️Bibliographic metadata and full text access for this article are provided via DergiPark.
DergiPark Record ↗
✨

AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

The study aimed to draw the phylogenetic tree of Tenothrips species using MOLE-BLAST, a computational tool widely used for phylogenetic analysis by COI and 18S Ribosomal RNA gene regions.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:The search for the neighboring sequence of the query for the construction of the phylogenetic tree above led to the use of MOLE-BLAST.
📊
Key Findings & Data:The construction of the phylogenetic tree was demonstrated using Tenothrips species from Muğla, Konya and Antalya in 2023.
💡
Conclusion & Impact:The study aimed to draw the phylogenetic tree of Tenothrips species using MOLE-BLAST, a computational tool widely used for phylogenetic analysis by COI and 18S Ribosomal RNA gene regions.
🔬Design:Araştırma Makalesi
📍Scope:2023 Verileri
⚙️Variables:Neighbor-Joining Tree · MOLE-BLAST · Tenothrips

Abstract

The search for the neighboring sequence of the query for the construction of the phylogenetic tree above led to the use of MOLE-BLAST. The construction of the phylogenetic tree was demonstrated using Tenothrips species from Muğla, Konya and Antalya in 2023. The Tenothrips species were found to show some degree of relationships based on the tree diagram in all regions. The study aimed to draw the phylogenetic tree of Tenothrips species using MOLE-BLAST, a computational tool widely used for phylogenetic analysis by COI and 18S Ribosomal RNA gene regions.

🔖

Cite This Article

Negiş, İ. Ş. (2024). Drawing the Phylogenetic Tree of Tenothrips species Using MOLE-BLAST: A Phylogenetic Analysis Approach. Selcuk Journal of Agriculture and Food Sciences, Cilt: 38 Sayı: 2, 226–230. https://doi.org//selcukjafsci.1355637

📄 Full Text PDF Viewer

📄

PDF görüntüleyici hazırlanıyor...

References (14)

  1. Adebule AP (2018). Plotting phylogenetic tree using MOLEBLAST; Technical Guide. Journal of Advancement in Medical and Life Sciences 6 (3): 1-3.
  2. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990). Basic local alignment search tool. Journal of Molecular Biology 215: 403–410. Doi:10.1016/S0022-2836(05)80360-2
  3. Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure for small quantities of fresh leaf tissue. 19 (1): 11–15.
  4. Hebert PDN, Ratnasingham S, De Waard JR (2003). Barcoding animal life: cytochrome c oxidase sub-unit 1 divergences among closely related species. Proceedings of the Royal Society of London. Series B: Biological Sciences 270: 96-S99. Doi:10.1098/rsbl.2003.0025
  5. Hao D, Gu X, Xiao P, Peng Y (2013). Chemical and biological research of Clematis medicinal resources. Chinese Science Bulletin 58 (10): 1120-1129. Doi:10.1007/s11434-012-5628-7
  6. Hillis DM, Dixon MT (1991). Ribosomal DNA: molecular evolution and phylogenetic inference. The Quarterly Review of Biology 66 (4): 411-453. Doi:10.1086/417338
  7. NCBI (National Center for Biotechnology Information), (2016). Database resources of the nation-al center for biotechnology information. Nucleic Acids Research 44: 7- 19. Doi:10.1093/nar/gkv1290
  8. NCBI (National Center for Biotechnology Information) (2023). MOLE-BLAST. https://www.ncbi.nlm.nih.gov/blast/moleblast/moleblast.cgi?CMD=Web (access date: 05.09.2023).
  9. Şahin Negiş İ, İkten C, Ünlü L, Tunç İ (2022). Molecular characterization of Thripidae (Thysanoptera) species in Karaman, Konya and Mersin (Turkey). Selcuk Journal of Agriculture and Food Sciences 36 (2): 203-211. Doi:10.15316/SJAFS.2022.026
  10. ThripsWiki (2023). Thrips Wiki-providing information on the World's thrips. http://thrips.info/wiki/Main_Page. (access date: 08.03.2023).
  11. Timm AE, Stiller M, Frey JE (2008). A molecular identification key for economically important thrips species (Thysanoptera: Thripidae) in southern Africa. African Entomology 16 (1): 68-75. Doi:10.4001/1021-3589-16.1.68
  12. Tunç İ, Hastenpflug-Vesmanis A (2016). Records and checklist of Thysanoptera in Turkey. Turkish Journal of Zoology 40: 769-778. Doi:10.3906/zoo-1512-37
  13. Wolfe BE, Button JE, Santarelli M, Dutton RJ (2014). Cheese rind communities provide tractable systems for in situ and in vitro studies of microbial diversity. Cell 158: 422-433. Doi: 10.1016/j.cell.2014.05.041
  14. Zhang SM, Mound LA, Hastings A (2018). Thysanoptera Chinensis. Thripidae Genera from China. https://keys.lucidcentral.org/keys/v3/thysanoptera_chinensis/index.html. (access date: 09.08.2023).