Dergiler / Turkish Journal of Agriculture and Forestry / 2017 / Cilt: 41 - Sayı: 6

Use of SNP markers by KASP assay for MAS studies in sunflower against Plasmopara halstedii

Sayfa
480–489
Yayın Tarihi
2022-10-19
DOI
—
🏛️Bu makalenin bibliyografik verileri ve tam metin bağlantısı DergiPark üzerinden sağlanmıştır.
DergiPark Kaydı ↗
✨

Yapay Zeka Hızlı Bakış & Çıkarımlar

AI Insight
⚡ TL;DR(1 Cümlede Hızlı Çıkarım)

This study has revealed the potential use of SNP markers in combination with KASP assay for MAS studies, particularly downymildew resistance in sunflower.

📌 3 Maddede Bu Makale

🎯
Amaç & Hipotez:Downy mildew is a fungal disease caused by Plasmopara halstedii and leads to loss of yield up to 100% in sunflower.
📊
Temel Bulgular & Veri:Marker-assisted selection (MAS) is a strategic approach in molecular breedingusing molecular markers.
💡
Sonuç & Katkı:This study has revealed the potential use of SNP markers in combination with KASP assay for MAS studies, particularly downymildew resistance in sunflower.
🔬Tür:Araştırma Makalesi
📍Kapsam:Genişletilmiş Akademik Örneklem
⚙️Değişkenler:Alan Parametreleri

Abstract

Downy mildew is a fungal disease caused by Plasmopara halstedii and leads to loss of yield up to 100% in sunflower. Diseasecontrol is performed mostly through chemical seed treatment and breeding. Due to the time consuming nature of conventionalbreeding, it is supported by biotechnological approaches. Marker-assisted selection (MAS) is a strategic approach in molecular breedingusing molecular markers. Single nucleotide polymorphisms (SNPs) such as insertions, deletions, and base-pair substitutions are moreadvantageous than other molecular markers. The abundance and biallelic nature of SNPs in a genome provide flexibility in the choosingof SNPs at the desired loci. Competitive allele-specific PCR (KASP) is a genotyping technology for screening of trait-specific SNPmarkers. In this study, SNP markers (NSA002867, NSA006138; NSA000052, NSA000354; NSA002220, NSA002251) linked with thedowny mildew resistance genes Plarg, Pl13, and Pl8, respectively, were analyzed via KASP in three parental crosses (RHA-419 × Colombi,RHA-419 × P64LC53, RHA-419 × Oliva) for Plarg, one parental cross (HA-R5 × P64LC53) for Pl13, one parental cross (P64LC53 × HA-89)for Pl8, and 140 F2 individuals. According to the allelic discrimination results, NSA002867 and NSA006138 markers were discriminativein all crosses for Plarg, NSA000354 marker was discriminative for Pl13, and NSA002220 and NSA002251 markers were discriminativefor Pl8. This study has revealed the potential use of SNP markers in combination with KASP assay for MAS studies, particularly downymildew resistance in sunflower.

🔖

Bu Makaleye Atıf Yap

UNCUOĞLU, A. A., AYDIN, Y., KÖSOĞLU, K., YUMUK, S., EVCİ, G. (2022). Use of SNP markers by KASP assay for MAS studies in sunflower against Plasmopara halstedii. Turkish Journal of Agriculture and Forestry, Cilt: 41 - Sayı: 6, 480–489. https://ajindex.com/articles/599342

📄 Tam Metin PDF Okuyucu

📄

PDF görüntüleyici hazırlanıyor...

Kaynakça (13)

  1. Apaydın A (2008). Zirai Mücadele Teknik Talimatları. Volume II. Republic of Turkey General Directorate of Agricultural Research and Policies. Ankara, Turkey: TAGEM. pp. 8-11.
  2. Chhetri M, Bariana H, Wong D, Sohail Y, Hayden M, Bansal U (2017). Development of robust molecular markers for marker-assisted selection of leaf rust resistance gene Lr23 in common and durum wheat breeding programs. Mol Breeding 37: 21. Doyle JJ, Doyle JL (1987). A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochem Bull 19: 11-15. Dußle CM, Hahn V, Knapp SJ, Bauer E (2004). PlArg from Helianthus argophyllus is unlinked to other known downy mildew resistance genes in sunflower. Theor Appl Genet 109: 1083-1086.
  3. Force EM, Dunford NT, Salas JJ (2015).
  4. Sunflower Chemistry, Production, Processing, and Utilization. 1st Edition.
  5. Urbana, IL, USA: AOCS Press.
  6. Forrest K, Pujol V, Bulli P, Pumphrey M, Wellings C, Herrera-Foessel S, Huerta-Espino J, Singh R, Lagudah E, Hayden M et al. (2014). Development of a SNP marker assay for the Lr67 gene of wheat using a genotyping by sequencing approach. Mol Breeding 34: 2109-2118.
  7. Gascuel Q, Martinez Y, Vear F, Godiard L (2015). The sunflower downy mildew pathogen Plasmopara halstedii. Mol Plant Pathol 16: 109-113.
  8. Gascuel Q, Bordat A, Sallet E, Pouilly N, Carrere S, Roux F, Vincourt P, Godiard L (2016). Effector polymorphisms of the sunflower downy mildew pathogen Plasmopara halstedii and their use to identify pathotypes from field isolates. PLOS ONE doi:10.1371/ journal.pone.0148513. Gedil MA, Wye C, Berry ST, Seger B, Peleman J, Jones R, Leon A, Slabaugh MB, Knapp SJ (2001). An integrated restriction fragment length polymorphism - amplified fragment length polymorphism linkage map for cultivated sunflower. Genome 44: 213-221.
  9. Gentzbittel L, Mestries E, Mouzeyar S, Mazeyrat F, Badaoui S, Vear F, De Labrouhe DT, Nicolas P (1999). A composite map of expressed sequences and phenotypic traits of the sunflower (Helianthus annuus L.) genome. Theor Appl Genet 99: 218-234.
  10. He C, Holme J, Anthony J (2014). SNP genotyping: the KASP assay. Methods Mol Biol 1145: 75-86.
  11. Hu J, Seiler G, Kole C (2010).
  12. Genetics, Genomics and Breeding of Sunflower. Boca Raton, FL, USA: CRC Press. Jocić S, Cvejić S, Hladni N, Miladinović, D, Miklič V (2010). Development of sunflower genotypes resistant to downy mildew. Helia 33: 173-180.
  13. Khera P, Upadhyaya HD, Pandey MK, Roorkiwal M, Sriswathi M, Janila P, Guo Y, McKain MR, Nagy ED, Knapp SJ et al. (201