Dergiler / Turkish Journal of Agriculture and Forestry / 2022 / Cilt: 46 - Sayı: 1

Genome-wide association studies (GWAS) revealed a genetic basis associated with floral traits in potato germplasm

Sayfa
90–103
Yayın Tarihi
2022-10-19
DOI
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⚡ TL;DR(1 Cümlede Hızlı Çıkarım)

To the best of our knowledge, this is the first study identifying the genetic basis of important floral traits and might be helpful to the scientific community interested in potato marker-assisted breeding in these traits.

📌 3 Maddede Bu Makale

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Amaç & Hipotez:Potato is an important noncereal staple crop serving as a source of food for a large number of the world’s population.
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Temel Bulgular & Veri:Genomewide association study (GWAS) analysis has become a useful tool to uncover the genetic basis of important plant traits by revealing significant association with the trait of interest.
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Sonuç & Katkı:To the best of our knowledge, this is the first study identifying the genetic basis of important floral traits and might be helpful to the scientific community interested in potato marker-assisted breeding in these traits.
🔬Tür:Araştırma Makalesi
📍Kapsam:2016 Verileri
⚙️Değişkenler:Alan Parametreleri

Abstract

Potato is an important noncereal staple crop serving as a source of food for a large number of the world’s population. Genomewide association study (GWAS) analysis has become a useful tool to uncover the genetic basis of important plant traits by revealing significant association with the trait of interest. The present study aimed to explore the phenotypic diversity and to identify the genetic basis associated with important floral traits. A total of 237 tetraploid potato genotypes were used as plant material, and field experiments were conducted according to augmented block design for two consecutive years (2016, 2017). Analysis of variance for the studied floral traits reflected highly significant genotypic effects. Mean data for both years revealed the significant variation for pistil length (5.53 to 9.92 mm), stamen length (6.04 to 9.26 mm), and pistil length above stamen (1.31 to 4.47 mm). Pearson’s correlation analysis reflected a highly significant and positive correlation of pistil length with stamen length (r = 0.42) and pistil length above stamen (r = 0.28). Principal component analysis was performed, and the first two PCs were considered accounting for a total of 81.2% variation. Constellation plot divided the studied potato panel into two main populations on the basis of stamen and pistil length. A total of 12,720SNP markers were used for the marker-trait association, and a total of 15 markers were found significantly associated with studied traits across both years. Identifying the same markers across both years helped in the validation of the obtained marker-trait associations. The identified significant markers reflected some of the putative candidate genes that might be beneficial in potato breeding programs. To the best of our knowledge, this is the first study identifying the genetic basis of important floral traits and might be helpful to the scientific community interested in potato marker-assisted breeding in these traits.

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Bu Makaleye Atıf Yap

ÇALIŞKAN, M. E., IJAZ, M., DEMİREL, U., NADEEM, M. A., DAWOOD, A., ZIA, M. A. B., ALI, F. (2022). Genome-wide association studies (GWAS) revealed a genetic basis associated with floral traits in potato germplasm. Turkish Journal of Agriculture and Forestry, Cilt: 46 - Sayı: 1, 90–103. https://ajindex.com/articles/599075

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Kaynakça (9)

  1. Achenbach U, Paulo J, Ilarionova E, Lubeck J, Strahwald J et al. (2009). Using SNP markers to dissect linkage disequilibrium at a major quantitative trait locus for resistance to the potato cyst nematode Globodera pallida on potato chromosome V. Theoretical and Applied Genetics 118: 619-629.
  2. Ali F, Yilmaz A, Chaudhary HJ, Nadeem MA, Rabbani MA et al. (2020). Investigation of morpho-agronomic performance and selection indices in the international safflower panel for breeding perspectives. Turkish Journal of Agriculture and Forestry 44: 103–120. doi: 10.3906/tar-1902-49
  3. Ali F, Yılmaz A, Nadeem MA, Habyarimana E, Subaşı I et al. (2019). Mobile genomic element diversity in world collection of safflower (Carthamus tinctorius L.) panel using iPBSretrotransposon markers. PloS one 14 (2): e0211985.
  4. Arteaga MC, Bello-Bedoy R, Leon-de la Luz JL, Delgadillo J et al. (2015). Phenotypic variation of flowering and vegetative morphological traits along the distribution for the endemic species Yucca capensis (Agavaceae). Botanical Sciences 93: 765-70.
  5. Ashman TL, Majetic CJ (2006). Genetic constraints on floral evolution: a review and evaluation of patterns. Heredity; 96: 343–352.
  6. Bali S, Patel G, Novy R, Vining K, Brown C et al. (2018). Evaluation of genetic diversity among Russet potato clones and varieties from breeding programs across the United States. PloS One 13 (8): e0201415. Barut M, Nadeem MA, Karakoy T, Baloch FS (2020). DNA fingerprinting and genetic diversity analysis of world quinoa germplasm using iPBS-retrotransposon marker system. Turkish Journal of Agriculture and Forestry 44 (5): 479-91.
  7. Berdugo-Cely J, Valbuena RI, Sa´nchez-Betancourt E, Barrero LS, Yockteng R (2017). Genetic diversity and association mapping in the Colombian Central Collection of Solanum tuberosum L. Andigenum group using SNPs markers. PLoS ONE 12 (3): e0173039. doi: 10.1371/journal.pone.0173039 Berg RL (1960). The ecological significance of correlation pleiades. Evolution; 14: 171–180.
  8. Bradbury PJ, Zhang ZW, Kroon DE, Casstevens TM, Ramdoss Y et al. (2007). TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 2: 2633-2635. doi: 10.1093/bioinformatics/btm308 Brock MT, Weinig C (2007). Plasticity and environment-specific covariances: an investigation of floral-vegetative and within flower correlations. Evolution 61: 2913–2924.
  9. Carputo D, Aversano R, Frsciante L (2004). Breeding potato for quality traits. In meeting of the physiology section of th