Journals / Gazi University Journal of Science Part A: Engineering and Innovation / 2022 / Cilt: 9 - Sayı: 3

Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes

Pages
299–313
Publication Date
2022-10-19
DOI
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AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

In conclusion, these compounds may be suitable compounds for further analysis in anti-cancer drug development with low toxic and targeted properties.

📌 3 Key Takeaways

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Objective & Hypothesis:Molecular docking process was performed to investigate the interactions between the synthesized compounds and human epidermal growth factor protein kinase domain EGFR (PDB ID:1M17) and cyclin-dependent kinase-2 CDK2 (PDB ID:3IG7) proteins.
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Key Findings & Data:NiII and CuII complexes of the L1H2 L2H2 and L3H2, ligands showed higher binding affinity to EGFR and CDK2.
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Conclusion & Impact:In conclusion, these compounds may be suitable compounds for further analysis in anti-cancer drug development with low toxic and targeted properties.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:vic-dioxim · Hydrazones · Molecular Docking

Abstract

Molecular docking process was performed to investigate the interactions between the synthesized compounds and human epidermal growth factor protein kinase domain EGFR (PDB ID:1M17) and cyclin-dependent kinase-2 CDK2 (PDB ID:3IG7) proteins. HOMO LUMO orbital energy analysis, quantum chemical calculations were made and the bioactivity parameters of the compounds were evaluated. NiII and CuII complexes of the L1H2 L2H2 and L3H2, ligands showed higher binding affinity to EGFR and CDK2. Especially, [Cu(L1H)2] and [Cu(L2H)2] complexes can be suggested as hit compounds against CDK2 and EGFR, respectively. These were supported by the inhibition constant values which were the lowest when compared to others. L1H2 L2H2 and L3H2, ligands had the lowest binding energy values when compared to metal complexes. Also, [Cu(L2H)2] complex had a high binding energy value against EGFR. [Ni(L2H)2] and [Cu(L2H)2] complexes with EGFR had the highest LE and FQ values and these were found to be in the recommended range. Furthermore, [Cu(L3H)2] had an acceptable FQ value however its LE value was out of range. Besides, [Cu(L2H)2] had a potent and sufficient electrophile ability (acceptor) among other compounds. In conclusion, these compounds may be suitable compounds for further analysis in anti-cancer drug development with low toxic and targeted properties.

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Cite This Article

ÇALIŞKAN, Ş. G., GENÇ, O., EROL, F., SARIKAVAKLI, N. (2022). Molecular Docking, HOMO-LUMO, Quantum Chemical Computation and Bioactivity Analysis of vic-Dioxim Derivatives Bearing Hydrazone Group Ligand and Their NiII and CuII Complexes. Gazi University Journal of Science Part A: Engineering and Innovation, Cilt: 9 - Sayı: 3, 299–313. https://ajindex.com/articles/520996

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References (7)

  1. Accelrys. (2014). Discovery Studio Visualizer Software. San Diego, CA: Accelrys. Allal, H., Belhocine, Y., & Zouaoui, E. (2018). Computational study of some thiophene derivatives as aluminum corrosion inhibitors. Journal of Molecular Liquids, 265, 668-678. doi:10.1016/j.molliq.2018.05.099 Altamimi, A. S., El-Azab, A. S., Abdelhamid, S. G., Alamri, M. A., Bayoumi, A. H., Alqahtani, S. M., Alabbas, A. B., Altharawi, A. I., Alossaimi, M. A., & Mohamed, M. A. (2021).
  2. Synthesis, Anticancer Screening of Some Novel Trimethoxy Quinazolines and VEGFR2, EGFR Tyrosine Kinase Inhibitors Assay; Molecular Docking Studies. Molecules, 26, 2992. doi:10.3390/molecules26102992 Canpolat, E., & Kaya, M. (2005). Synthesis and formation of a new vic-dioxime complexes. Journal of Coordination Chemistry, 58(14), 1217-1224. doi:10.1080/00958970500130501 DeLano, W. L. (2013). The PyMOL Molecular Graphics System. San Carlos, CA: DeLano Scientific LLC. http://www.pymol.org
  3. Ferdous, J., & Kawsar, S. M. A. (2020).
  4. Thermochemical, Molecular Docking and ADMET Studies of Some Methyl α-D-Glucopyranoside Derivatives. The Chittagong University Journal of Science, 42(1), 58-83. doi:10.3329/cujs.v42i1.54238 Fouad, R., & Adly, O. M. I. (2021). Novel Cu2+ and Zn2+ nanocomplexes drug based on hydrazone ligand bearings chromone and triazine moieties: Structural, spectral, DFT, molecular docking and cytotoxic studies. Journal of Molecular Structure, 1225, 129158. doi:10.1016/j.molstruc.2020.129158 Haider, K., Rehman, S., Pathak, A., Najmi, A. K., & Yar, M. S. (2021). Advances in 2‐substituted benzothiazole scaffold‐based chemotherapeutic agents. Archiv der Pharmazie, 354(12), e2100246. doi:10.1002/ardp.202100246 Horchani, M., Della Sala, G., Caso, A., D’Aria, F., Esposito, G., Laurenzana, I., Giancola, C., Costantino, V., Jannet, H. B., & Romdhane, A. (2021). Molecular Docking and Biophysical Studies for Antiproliferative Assessment of Synthetic Pyrazolo-Pyrimidinones Tethered with Hydrazide-Hydrazones. International Journal of Molecular Sciences, 22, 2742. doi:10.3390/ijms22052742 Knizia, G. (2022)
  5. IboView, Version 20150427, http://www.iboview.org, Accessed: 18/072022
  6. Koopmans, T. (1934). Über die Zuordnung von Wellenfunktionen und Eigenwerten zu den einzelnen Elektronen eines Atoms. Physica, 1(1-6), 104–113. doi:10.1016/S0031-8914(34)90011-2
  7. Kurtoglu, M., & Baydemir, S.A. (2007). Studies on Mononuclear Transition Metal Chelates Derived from a Novel (E, E)-Dioxime: Synthesis, Characterization and B