Journals / Turkish Journal of Biology / 2013 / Cilt: 37 - Sayı: 3

Molecular characterization of Yarrowia lipolytica strains isolated from different environments and lipase profiling

Pages
249–258
Publication Date
2013-03-01
DOI
—
🏛️Bibliographic metadata and full text access for this article are provided via DergiPark.
DergiPark Record ↗
✨

AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

The Y. lipolytica strain that was produced in the media containing fish oil was found to be the best lipase producer.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:In order to analyze yeasts that produce industrial compounds, it is essential to identify them accurately.
📊
Key Findings & Data:Therefore, in this study, an accurate identification of Y. lipolytica strains was performed using 3 different molecular biological methods (RFLP analysis of ITS1-5.8S rDNA-ITS2 and 18S rDNA regions and sequencing of the D1/D2 domain of the 26S rDNA region).
💡
Conclusion & Impact:The Y. lipolytica strain that was produced in the media containing fish oil was found to be the best lipase producer.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:Key words: Yarrowia lipolytica · molecular characterization · PCR-RFLP of rDNA

Abstract

In order to analyze yeasts that produce industrial compounds, it is essential to identify them accurately. Yarrowia lipolytica is one of the most extensively studied 'nonconventional' yeasts, being a strictly aerobic microorganism capable of producing important metabolites and having an intense secretory activity, which justifies efforts to use it in industry (as a biocatalyst), in molecular biology, and in studies of genetics. Therefore, in this study, an accurate identification of Y. lipolytica strains was performed using 3 different molecular biological methods (RFLP analysis of ITS1-5.8S rDNA-ITS2 and 18S rDNA regions and sequencing of the D1/D2 domain of the 26S rDNA region). The 26S rRNA gene sequence of the strains showed sequence homology with various Y. lipolytica strains from the National Center for Biotechnology Information. A number of different lipids (tributyrin, olive oil, and fish oil) were screened in terms of the growth of Y. lipolytica strains and lipase production. It was determined that all lipid-related substrates supported lipase production levels ranging from 4.27 U/mL (tributyrin) to 37.08 U/mL (fish oil). Fish oil (1%) showed maximum specific activity in the supernatant (264.85 U/mg of protein) and TEM TAN 46. The Y. lipolytica strain that was produced in the media containing fish oil was found to be the best lipase producer.

Özet

In order to analyze yeasts that produce industrial compounds, it is essential to identify them accurately. Yarrowia lipolytica is one of the most extensively studied 'nonconventional' yeasts, being a strictly aerobic microorganism capable of producing important metabolites and having an intense secretory activity, which justifies efforts to use it in industry (as a biocatalyst), in molecular biology, and in studies of genetics. Therefore, in this study, an accurate identification of Y. lipolytica strains was performed using 3 different molecular biological methods (RFLP analysis of ITS1-5.8S rDNA-ITS2 and 18S rDNA regions and sequencing of the D1/D2 domain of the 26S rDNA region). The 26S rRNA gene sequence of the strains showed sequence homology with various Y. lipolytica strains from the National Center for Biotechnology Information. A number of different lipids (tributyrin, olive oil, and fish oil) were screened in terms of the growth of Y. lipolytica strains and lipase production. It was determined that all lipid-related substrates supported lipase production levels ranging from 4.27 U/mL (tributyrin) to 37.08 U/mL (fish oil). Fish oil (1%) showed maximum specific activity in the supernatant (264.85 U/mg of protein) and TEM TAN 46. The Y. lipolytica strain that was produced in the media containing fish oil was found to be the best lipase producer.

🔖

Cite This Article

AKPINAR, O., UÇAR, F. B. (2013). Molecular characterization of Yarrowia lipolytica strains isolated from different environments and lipase profiling. Turkish Journal of Biology, Cilt: 37 - Sayı: 3, 249–258. https://ajindex.com/articles/181644

📄 Full Text PDF Viewer

📄

PDF görüntüleyici hazırlanıyor...

References (1)

  1. This study Previous study Y. lipolytica TEM YL 3 TEM YL 3 Full-fat cheese (9) Y. lipolytica TEM YL 5 TEM YL 5 Semi-fat cheese (9) Y. lipolytica TEM YL 6 TEM YL 6 Semi-fat cheese (9) Y. lipolytica TEM YL 9 TEM YL 9 Full-fat cheese (9) Y. lipolytica TEM YL 10 TEM YL 10 Full-fat cheese (9) Y. lipolytica TEM YL 17 TEM YL 17 Kaşar cheese (9) Y. lipolytica TEM YL 18 TEM YL 18 Kaşar cheese (9) Y. lipolytica TEM YL 19 TEM YL 19 Kaşar cheese (9) Y. lipolytica TEM YL 20 TEM YL 20 Kaşar cheese (9) Y. lipolytica TEM YL 21 TEM YL 21 Low-fat cheese (9) Y. lipolytica TEM ORC 2 Strain Number 2 Waste sludge (15) Y. lipolytica TEM ORC 3 Strain Number 3 Waste water (15) Y. lipolytica TEM ORC 4 Strain Number 4 Soil (15) Y. lipolytica TEM ORC 9 Strain Number 9 Soil (15) Y. lipolytica TEM ORC 10 Strain Number 10 Waste water (15) Y. lipolytica TEM ORC 11 Strain Number 11 Waste water (15) Y. lipolytica TEM ORC 12 Strain Number 12 Waste water (15) Y. lipolytica TEM ORC 13 Strain Number 13 Waste water (15) Y. lipolytica TEM ORC 17 Strain Number 17 Soil (15) Y. lipolytica TEM ORC 20 Strain Number 20 Waste water (15) Y. lipolytica TEM TAN 10 Isolate Number 10 White cheese (16) Y. lipolytica TEM TAN 46 Isolate Number 46 White cheese (17) M T 3 5 6 9 10 17 18 19 20 21 Or2 Or3 Or4 M 1000 bp 900 bp 800 bp 700 bp 600 bp 500 bp 400 bp 300 bp 200 bp 100 bp 1000 bp 900 bp 800 bp 700 bp 600 bp 500 bp 400 bp 300 bp 200 bp 100 bp Figure 1. Amplification of the ITS region of Yarrowia lipolytica strains. Line 1, M, DNA marker (100 bp); Line 2, T, Yarrowia lipolytica CBS6124 type strain; other lines show Yarrowia lipolytica strains, respectively. Andrade et al. studied the RFLP analysis of 18S rDNA examined to discriminate yeast species usually found in dry-cured meat products, and they found that the RFLP of the 18S rDNA region allowed discrimination of the species Saccharomyces cerevisiae, Rhodotorula mucilaginosa, and Y. lipolytica (7). However, minimal differences at the strain level were found for all of the species tested. Results found in the literature about suitability of RFLP of the 18S rDNA are contradictory. Thus, this method has been also reported as unsuitable for the differentiation of yeasts while it has been proven as a useful technique for discriminating several yeast species such as Candida stellata, Metschnikowia pulcherrima, Kloeckera apiculata, and Schizosaccharomyces pombe (11). Therefore, this method is not used routinely for the discrimination of yeasts species; however, i