Journals / Turkish Journal of Veterinary Research / 2026 / Volume: 10 Issue: 2

Determination of antimicrobial susceptibility and selected virulence genes of Avian Pathogenic Escherichia coli (APEC) strains

Muazzez Yeşilyurt(SİİRT ÜNİVERSİTESİ, VETERİNER FAKÜLTESİ)0000-0003-4195-6335
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Publication Date
2026-09-15
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AI Summary & Key Takeaways

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⚡ TL;DR(Too Long; Didn't Read)

Furthermore, high susceptibility rates to preferred field antimicrobials provide critical data for regional empirical treatment strategies.

📌 3 Key Takeaways

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Objective & Hypothesis:Objectives: Pathogenic Escherichia coli bacteria cause significant economic losses in poultry through extraintestinal infections.
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Key Findings & Data:Therefore, determining the virulence gene association and antibiotic susceptibility of these isolates is crucial for improving treatment strategies and reducing zoonotic threats to human health.
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Conclusion & Impact:Furthermore, high susceptibility rates to preferred field antimicrobials provide critical data for regional empirical treatment strategies.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:Antimicrobial susceptibility · Avian Pathogenic Escherichia coli · Poultry

Abstract

Objectives: Pathogenic Escherichia coli bacteria cause significant economic losses in poultry through extraintestinal infections. Therefore, determining the virulence gene association and antibiotic susceptibility of these isolates is crucial for improving treatment strategies and reducing zoonotic threats to human health. This study aimed to differentiate between Avian Pathogenic Escherichia coli (APEC) and non-APEC strains by investigating the presence of specific virulence genes in Escherichia coli strains isolated from cloacal swabs of diarrheal chickens and turkeys. It also aimed to determine multidrug resistance profiles and comparatively identify the prevalence of antimicrobial resistance genes among chicken and turkey-derived isolates. Materials and Methods: In this study, Escherichia coli isolates obtained from cloacal swabs of turkeys (n=25) and chickens (n=25) diagnosed with diarrhea in family farms in Siirt, Batman, and Bitlis provinces of Türkiye, and preserved in the laboratory culture collection of the Microbiology Department of Siirt University, were used. Gene presence was investigated using Polymerase Chain Reaction, while antimicrobial susceptibility was determined by the disk diffusion method. Results: PCR analysis revealed the prevalence of iutA, iss, ompT, hlyF, and iroN genes as 36%, 32%, 28%, 22%, and 18%, respectively. Seven isolates (14%) containing at least four genes were classified as APEC, while 43 isolates (86%) were classified as commensal. It was determined that the obtained isolates showed 100% susceptibility to cefoxitin, piperacillin/tazobactam, and gentamicin. Isolates were also susceptible to cefpodoxime (92%), ciprofloxacin (86%), streptomycin (82%), trimethoprim-sulfamethoxazole (80%), and tetracycline (52%). Conclusions: Consequently, the presence of key virulence genes in a large proportion of APEC isolates necessitates further research to elucidate their specific roles in pathogenesis. Furthermore, high susceptibility rates to preferred field antimicrobials provide critical data for regional empirical treatment strategies.

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Cite This Article

Yeşilyurt, M., Taşdemir, A. (2026). Determination of antimicrobial susceptibility and selected virulence genes of Avian Pathogenic Escherichia coli (APEC) strains. Turkish Journal of Veterinary Research, Volume: 10 Issue: 2. https://doi.org/10.47748/tjvr.2001306

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References (32)

  1. Akbari A, Asadpour L. An evaluation of antimicrobial resistance and virulence potential of Escherichia coli isolates obtained from feces of ornamental birds in Guilan. Iran J Med Microbiol. 2022; 16(5):405-411.
  2. Al Azad MAR, Rahman MM, Amin R, et al. Susceptibility and multidrug resistance patterns of Escherichia coli isolated from cloacal swabs of live broiler chickens in Bangladesh. Pathogens. 2019; 8:118.
  3. Awad AM, El-Shall, NA, Khalil DS, et al. Incidence, pathotyping, and antibiotic susceptibility of avian pathogenic Escherichia coli among diseased broiler chicks. Pathogens. 2020; 9(2):114.
  4. Awawdeh L, Forrest R, Turni C, Cobbold R, Henning J, Gibson J. Virulence‐associated genes in faecal and clinical Escherichia coli isolates cultured from broiler chickens in Australia. Aust Vet J. 2024; 102:398-406.
  5. Clinical and Laboratory Standards İnstitute (CLSI). Performance Standards for Antimicrobial Susceptibility Testing. 34th ed. CLSI supplement MlOO (ISBN 978-1-68440-220-5; ISBN 978-1-68440-221-2. Clinical and Laboratory Standards İnstitute USA, 2024.
  6. Cunha MPV, De Oliveira MGX, De Oliveira MCV, et al. Virulence profiles, phylogenetic background, and antibiotic resistance of Escherichia coli isolated from turkeys with airsacculitis. Sci World J. 2014; 2014(1): 289024.
  7. de Pontes PS, Coutinho SDA, de Oliveira Iovine R, Cunha MPV, Knöbl T, de Carvalho VM. Survey on pathogenic Escherichia coli and Salmonella spp. in captive cockatiels (Nymphicus hollandicus). Braz J Microbiol. 2018; 49(Suppl 1):76-82.
  8. Eltai NO, Abdfarag EA, Al-Romaihi H, et al. Antibiotic resistance profile of commensal Escherichia coli isolated from broiler chickens in Qatar. J Food Prot. 2018; 81(2):302-307.
  9. Gholami-Ahangaran M, Moravvej A, Safizadeh Z, Nogoorani VS, Zokaei M, Ghasemian SO. The evaluation of ESBL genes and antibiotic resistance rate in Escherichia coli strains isolated from meat and intestinal contents of turkey in Isfahan, Iran. Iran J Vet Res. 2021; 22(4):318.
  10. Hossain FE, Islam S, Islam MA, Islam S, Ahmed F. Detection of virulence genes of APEC (avian pathogenic Escherichia coli) isolated from poultry in Noakhali, Bangladesh. Biores Com. 2021; 7(1):967-972.
  11. Ibrahim N, Boyen F, Mohsin AS, et al. Antimicrobial resistance in Escherichia coli and its correlation with antimicrobial use on commercial poultry farms in Bangladesh. Antibiotics. 2023; 12(9):1361.
  12. Ievy S, Islam MS, Sobur MA, et al. Molecular detection of avian pathogenic Escherichia coli (APEC) for the first time in layer farms in Bangladesh and their antibiotic resistance patterns. Microorganisms. 2020; 8(7):1021.
  13. Ilcebaylik A, Turkyilmaz S. Investigation of important virulence genes and antibiotic resistance of Escherichia coli isolated from broiler chickens. Isr.J. Vet Med. 2020; 75(4):204-214.
  14. Johnson TJ, Wannemuehler Y, Doetkott C, Johnson SJ, Rosenberger SC, Nolan LK. Identification of minimal predictors of avian pathogenic Escherichia coli virulence for use as a rapid diagnostic tool. J Clin Microbiol. 2008; 46:3987-3996.
  15. Karacan Sever N, Şahan Yapicier Ö, Akan M. Distribution of serotypes and antibiotic resistance of avian pathogenic Escherichia coli strains isolated from chickens. Kafkas Univ Vet Fak Derg. 2022; 28(6):767-772.
  16. Keskin B, Demirbaş N. Developments arised in poultry meat sector in Turkey: Problems and precautions. J Agric Fac Uludag Univ. 2012; 26(1):117-130.
  17. Khalid N, Bukhari SM, Alshahrani MY, et al. Nucleotide analysis and prevalence of Escherichia coli isolated from feces of some captive avian species. J King Saud Univ Sci. 2023; 35(1):102375.
  18. Kundu T, Rumi NA, Hossain MK, Rahman MS, Hossain MMK, Halder J. Isolation of multidrug-resistant Escherichia coli from turkeys in Dinajpur, Bangladesh, and their antibiogram profile. J Adv Vet Anim Res. 2021; 8(1):64.
  19. Liu L, Zhao G, Li X, Xu Z, Lei H, Shen X. Development of rapid and easy detection of Salmonella in food matrics using RPA-CRISPR/Cas12a method. Lwt. 2022; 162:113443.
  20. Mohamed L, Ge Z, Yuehua L, et al. Virulence traits of avian pathogenic (APEC) and fecal (AFEC) E. coli isolated from broiler chickens in Algeria. Trop Anim Health Prod. 2018; 50:547-553.
  21. Ocak F, Çöven F, Ertunç E, Eğilmez T, Türkyilmaz S. Determination of the most significant serotypes and antimicrobial susceptibilities of avian pathogenic Escherichia coli isolates in Turkey. Eur Poult Sci. 2018; 82:1-12.
  22. Ovi F, Zhang L, Nabors H, Jia L, Adhikari P. A compilation of virulence-associated genes that are frequently reported in avian pathogenic Escherichia coli (APEC) compared to other E. coli. J Appl Microbiol. 2023; 134(3):1-20.
  23. Ranabhat G, Subedi D, Karki J, Paudel R, Luitel H, Bhattarai RB. Molecular detection of avian pathogenic Escherichia coli (APEC) in broiler meat from retail meat shop. Heliyon. 2024; 10:e35661.
  24. Romero-Barrios P, Deckert A, Parmley EJ, Leclair D. Antimicrobial resistance profiles of Escherichia coli and Salmonella isolates in Canadian broiler chickens and their products. Foodborne Pathog Dis. 2020; 17(11):672-678.
  25. Sariçam İnce S, Ünal A, Akan M. Comparison of pathogenicity factors of avian pathogenic and extraintestinal pathogenic Escherichia coli isolates originating from broiler chickens. Br Poult Sc. 2025; 66(4):515-522.
  26. Sarker MS, Mannan MS, Ali MY, Bayzid M, Ahad A, Bupasha ZB. Antibiotic resistance of Escherichia coli isolated from broilers sold at live bird markets in Chattogram, Bangladesh. J Adv Vet Anim Res. 2019; 6(3):272-277.
  27. Swelum AA, Elbestawy AR, El-Saadony MT, et al. Ways to minimize bacterial infections, with special reference to Escherichia coli, to cope with the first-week mortality in chicks: an updated overview. Poult Sci. 2021; 100(5):101039.
  28. Tian T, Bao Y, Hui J, et al. Analysis of avian pathogenic Escherichia coli (APEC) and its antimicrobial resistance risk characteristics and critical control points in laying hens. Poult Sci. 2025; 104(12):106049.
  29. Tobia PS, Ohimain EI, Ofongo RTS. Molecular determination of virulent genes from avian pathogenic Escherichia coli isolated from poultry farm droppings in Bayelsa State, Nigeria. Microbes Infect Dis. 2023; 4(1):259-266.
  30. Varga C, Guerin MT, Brash ML, Slavic D, Boerlin P, Susta L. Antimicrobial resistance in fecal Escherichia coli and Salmonella enterica isolates: A two-year prospective study of small poultry flocks in Ontario, Canada. BMC Vet Res. 2019; 15:464.
  31. Wang XR, Chen JC, Kang Y, Jiang N, An SC, Gao ZC. Prevalence and characterization of plasmid-mediated blaESBL with their genetic environment in Escherichia coli, Klebsiella pneumoniae in patients with pneumonia. Chin Med J. 2012; 125(5):894-900.
  32. World Health Organization (WHO). Antimicrobial resistance. Fact sheets. Available at: https://www.who.int/news-room/fact-sheets/detail/antimicrobial-resistance. Accessed, 2023.