Journals / Ankara Üniversitesi Veteriner Fakültesi Dergisi / 2026 / Volume: 73 Issue: 3

Preliminary study of Lake Sinai virus in honey bee samples from İzmir and Muğla, Türkiye

Abdurrahman Anıl Çağırgan(İzmir/Bornova Veterinary Control Institute, Department of Virology)0000-0001-7766-3150
Kemal Pekmez(Izmir/Bornova Veterinary Control Institute, Department of Virology,)0000-0001-7077-6582
Murat Kaplan(Izmir/Bornova Veterinary Control Institute, Department of Virology)0000-0002-2634-6478
Fatih Arslan(Izmir/Bornova Veterinary Control Institute, Department of Virology,)0000-0002-6706-3650
Ayfer Findik Pakrooh(SIIRT UNIVERSITY, FACULTY OF VETERINARY MEDICINE)0009-0000-5929-9594
Pages
—
Publication Date
2026-03-19
🏛️Bibliographic metadata and full text access for this article are provided via DergiPark.
DergiPark Record ↗
✨

AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

Further research is necessary to assess the pathogenicity of different LSV variants and their potential impact on colony health.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:Lake Sinai virus (LSV) is an RNA virus that affects honey bee health and is considered a significant contributor to colony losses.
📊
Key Findings & Data:In this study, the prevalence of LSV was investigated in adult bees and capped broods collected from 32 apiaries in İzmir and Muğla, Türkiye.
💡
Conclusion & Impact:Further research is necessary to assess the pathogenicity of different LSV variants and their potential impact on colony health.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:Honey bees · Lake Sinai virus · LSV-2

Abstract

Lake Sinai virus (LSV) is an RNA virus that affects honey bee health and is considered a significant contributor to colony losses. In this study, the prevalence of LSV was investigated in adult bees and capped broods collected from 32 apiaries in İzmir and Muğla, Türkiye. Using RT-PCR, LSV was detected in 68.7% of adult bees and 46.8% of capped broods, indicating a widespread presence in the studied regions. Phylogenetic analysis was conducted to determine the genetic diversity of LSV strains. In the variant typing study, LSV-2 was the most commonly detected variant, while LSV-4 was identified at a lower frequency. However, LSV-1, LSV-3, and LSV-5 were not detected in the analyzed samples. According to the phylogenetic analysis, high genetic heterogeneity was observed among LSV strains, with no distinct clustering by geographical distribution. These findings suggest that LSV is prevalent in Türkiye and exhibits genetic diversity independent of its location. This study provides RdRp-based phylogenetic data on honey bee LSV from Türkiye, contributing valuable molecular evidence to ongoing efforts to understand LSV distribution and evolution. Further research is necessary to assess the pathogenicity of different LSV variants and their potential impact on colony health.

🔖

Cite This Article

Çağırgan, A. A., Pekmez, K., Kaplan, M., Arslan, F., Pakrooh, A. F. (2026). Preliminary study of Lake Sinai virus in honey bee samples from İzmir and Muğla, Türkiye. Ankara Üniversitesi Veteriner Fakültesi Dergisi, Volume: 73 Issue: 3. https://doi.org/10.33988/auvfd.1762170

📄 Full Text PDF Viewer

📄

PDF görüntüleyici hazırlanıyor...

References (37)

  1. Alger S, Burnham PA, Brody AK (2019): Flowers as viral hot spots: Honey bees (Apis mellifera) unevenly deposit viruses across plant species. PLoS One, 14, e0221800.
  2. Amakpe F, De Smet L, Brunain M, et al (2016): Discovery of Lake Sinai virus and an unusual strain of acute bee paralysis virus in West African apiaries. Apidologie, 47, 35–47.
  3. Bigot D, Dalmon A, Roy B, et al (2017): The discovery of Halictivirus resolves the Sinaivirus phylogeny. J Gen Virol, 98, 2864–2875.
  4. Brasesco C, de Landa GF, Quintana S, et al (2021): A Lake Sinai Virus variant is infecting managed honey bee colonies of Argentina with varying degrees of Varroa destructor infestation. Bee World, 126, 126–131.
  5. Cagirgan AA, Yazici Z (2021): The prevalence of seven crucial honeybee viruses using multiplex RT-PCR and their phylogenetic analysis. Turk J Vet Anim Sci, 45, 44–55.
  6. Cagirgan AA, Kaplan M, Pekmez K, et al (2022): First detection of Lake Sinai Virus (LSV) in Varroa mites in Turkey. Vet Sci Pract, 17, 16-19.
  7. Calderone NW (2012): Insect pollinated crops, insect pollinators and US agriculture: trend analysis of aggregate data for the period 1992-2009. PLoS One, 7, e37235.
  8. Cornman RS, Tarpy DR, Chen Y, et al (2012): Pathogen webs in collapsing honey bee colonies. PLoS One, 7, e43562.
  9. Cox-Foster DL, Conlan S, Holmes EC, et al (2007): A metagenomic survey of microbes in honey bee colony collapse disorder. Science, 318, 283–287.
  10. D'Alvise P, Seeburger V, Gihring K, et al (2019): Seasonal dynamics and co-occurrence patterns of honey bee pathogens revealed by high-throughput RT-qPCR analysis. Evol Ecol, 9, 10241–10252.
  11. Daughenbaugh KF, Martin M, Brutscher LM, et al (2015): Honey bee infecting Lake Sinai viruses. Viruses, 7, 3285–3309.
  12. Ellis JD, Evans J, Pettis J (2010): Colony losses, managed colony population decline, and Colony Collapse Disorder in the United States. J Apic Res, 49, 134–136.
  13. Faurot-Daniels C, Glenny W, Daughenbaugh KF, et al (2020): Longitudinal monitoring of honey bee colonies reveals dynamic nature of virus abundance and indicates a negative impact of Lake Sinai virus 2 on colony health. PLoS One, 15, e0237544.
  14. Gallai N, Salles JM, Settele J, et al (2009): Economic valuation of the vulnerability of world agriculture confronted with pollinator decline. Ecol Econ, 68, 810–821.
  15. Granberg F, Vicente-Rubiano M, Rubio-Guerri C, et al (2013): Metagenomic detection of viral pathogens in Spanish honeybees: co-infection by aphid lethal paralysis virus, Israel acute paralysis virus, and Lake Sinai viruses. PLoS One, 8, e57459.
  16. Grozinger CM, Flenniken ML (2019): Bee viruses: Ecology, pathogenicity, and impacts. Annu Rev Entomol, 64, 205–226.
  17. Gumusova O, Albayrak H, Kurt M, et al (2010): Prevalence of three honey bee viruses in Turkey. Veterinarski Arhiv, 80, 779–785.
  18. Ilyasov RA, Lee ML, Yunusbaev UB, et al (2020): Estimation of C-derived introgression into A. m. mellifera colonies in the Russian Urals using microsatellite genotyping. Gene "is" Gene, 42, 987–996.
  19. Ilyasov RA, Poskryakov AV, Nikolenko AG (2017): Modern methods of assessing the taxonomic affiliation of honeybee colonies. Russ J Genet Appl Res, 15, 41–51.
  20. Kalayci G, Cagirgan AA, Kaplan M, et al. (2020): The role of viral and parasitic pathogens affected by colony losses in Turkish apiaries. Kafkas Univ Vet Fak Derg, 26, 671–677.
  21. Leonhardt SD, Gallai N, Alejandro GL, et al (2013): Economic gain, stability of pollination and bee diversity decrease from southern to northern Europe. Basic Appl Ecol, 14, 461–471.
  22. Malfroya SF, Roberts JM, Perrone S, et al (2016): A pest and disease survey of the isolated Norfolk Island honey bee (Apis mellifera) population. J Apic Res, 55, 202–211.
  23. Muz D, Muz MN (2024): The Genetic Characterization of Lake Sinai Virus in Colony Losses Apiaries in Türkiye. TJVR, 8,129–136.
  24. Nei M, Kumar S (2000): Molecular Evolution and Phylogenetics. Oxford University Press, New York.
  25. Parmentier L, de Graaf DC, Meeus I (2016): Varroa destructor Macula-like virus, Lake Sinai virus and other new RNA viruses in wild bumblebee hosts (Bombus pascuorum, Bombus lapidarius and Bombus pratorum). J Invertebr Pathol, 134, 6–11.
  26. Ravoet J, De Smet L, Meeus I, et al (2014): Widespread occurrence of honey bee pathogens in solitary bees. J Invertebr Pathol, 122, 55–58.
  27. Ravoet J, De Smet L, Wenseleers T, et al (2015): Genome sequence heterogeneity of Lake Sinai Virus found in honey bees and Orf1/RdRP-based polymorphisms in a single host. Virus Res, 2, 67–72.
  28. Remnant EJ, Shi M, Buchmann G, et al (2017): A diverse range of novel RNA viruses in geographically distinct honey bee populations. Virol J, 91, e00158-17.
  29. Roberts JM, Anderson DL, Durr P (2017): Absence of Deformed wing virus and Varroa destructor in Australia provides unique perspectives on honey bee viral landscapes and colony losses. Sci Rep, 7, 6925.
  30. Runckel C, Flenniken ML, Engel JC, et al (2011): Temporal analysis of the honey bee microbiome reveals four novel viruses and seasonal prevalence of known viruses, Nosema, and Crithidia. PLoS One, 6, e20656.
  31. Shojaei A, Nourian A, Khanjani M, et al (2021): The first molecular characterization of Lake Sinai virus in honey bees (Apis mellifera) and Varroa destructor mites in Iran. J Apic Res, 62, 1176–1182.
  32. Šimenc L, Kuhar U, Jamnikar-Ciglenečki U, et al (2020): First complete genome of Lake Sinai virus Lineage 3 and genetic diversity of Lake Sinai virus strains from honey bees and bumble bees. J Econ Entomol, 113, 1055–1061.
  33. Tamura K, Stecher G, Kumar S (2021): MEGA 11: Molecular Evolutionary Genetics Analysis Version 11. Mol Biol Evol, 38, 3022–3027.
  34. Tentcheva D, Gauthier L, Zappulla N, et al (2004): Prevalence and seasonal variations of six bee viruses in Apis mellifera L. and Varroa destructor mite populations in France. Appl Environ Microbiol, 70, 7185–7191.
  35. Tozkar CÖ, Kence M, Kence A, et al (2015): Metatranscriptomic analyses of honey bee colonies. Frontiers in Genetics, 6, 100.
  36. Van Engelsdorp D, Caron D, Hayes J, et al (2012): A national survey of managed honey bee 2010-11 winter colony losses in the USA: Results from the bee informed Partnership. J Apic Res, 51, 115–124.
  37. Walker P, Siddel SD, Lefkowitz EJ, et al (2021): Changes to virus taxonomy and the statutes ratified by the international committee on taxonomy of viruses. Arch Vir, 165, 2737–2748.