Journals / Hacettepe Journal of Biology and Chemistry / 2026 / Volume: 47 Issue: 2

Naproxen Derivative Interaction Properties with ct-DNA

Nuriye Akbay(ISTANBUL MEDENIYET UNIVERSITY)0000-0003-1993-4295
Zeynep Koksal(ISTANBUL MEDENIYET UNIVERSITY)0000-0001-8203-4623
Pages
—
Publication Date
2019-09-18
🏛️Bibliographic metadata and full text access for this article are provided via DergiPark.
DergiPark Record ↗
✨

AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

In addition to spectral data, docking studies revealed that NH-A_DNA and NH-B_DNA complexes had different interaction and conformational trends to each DNA isomer.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:Interaction mode of a naproxen derivative (NH) with ct-DNA was explored by absorption and fluorescence spectroscopy.
📊
Key Findings & Data:The experimental results revealed the static quenching as a result of groove binding between the naproxen derivative and ct-DNA.
💡
Conclusion & Impact:In addition to spectral data, docking studies revealed that NH-A_DNA and NH-B_DNA complexes had different interaction and conformational trends to each DNA isomer.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:Quenching · Groove binding · Naproxen

Abstract

Interaction mode of a naproxen derivative (NH) with ct-DNA was explored by absorption and fluorescence spectroscopy. The experimental results revealed the static quenching as a result of groove binding between the naproxen derivative and ct-DNA. Computational studies were carried out to deeper understanding of the interactions. Molecular docking calculations shown that the interaction between NH and ct-DNA is resulted by groove binding. In addition to spectral data, docking studies revealed that NH-A_DNA and NH-B_DNA complexes had different interaction and conformational trends to each DNA isomer.

🔖

Cite This Article

Akbay, N., Koksal, Z., Taskin-tok, T., Uzgoren-baran, A. (2019). Naproxen Derivative Interaction Properties with ct-DNA. Hacettepe Journal of Biology and Chemistry, Volume: 47 Issue: 2. https://doi.org/10.15671/hjbc.517481

📄 Full Text PDF Viewer

📄

PDF görüntüleyici hazırlanıyor...

References (21)

  1. References1. M. A. Husain, Z. Yaseen, S. U. Rehman, T. Sarwar, and M. Tabish, Naproxen Intercalates with DNA and Causes Photocleavage Through ROS Generation, The FEBS Journal, 24 (2013) 6569–6580.
  2. References2. K. Gurova, New hopes from old drugs: revisiting DNA-binding small molecules as anticancer agents, Future Oncol., 5 (2009) 1685–1704.
  3. References3. D. R. Boer, A. Canals, and M. Coll, DNA-binding drugs caught in action: the latest 3D pictures of drug-DNA complexes, Dalton Trans., 3 (2009) 399-414.
  4. References4. U. Pindur, M. Jansen, and T. Lemster, Advances in DNA-ligands with groove binding, intercalating and/or alkylating activity: chemistry, DNA-binding and biology, Curr. Med. Chem., 12 ( 2005) 2805-2847.
  5. References5. L. Strekowskı and B. Wılson, Noncovalent interactions with DNA: an overview, Mutat Res-Fund Mol M., 623 ( 2007) 3–13.
  6. References6. J. Li, B. Li, Y. Wu, S. Shuang, C. Dong, and M. Choi, Luminescence and binding properties of two isoquinoline alkaloids chelerythrine and sanguinarine with ctDNA, Spectrochim Acta A Mol Biomol Spectrosc., 95 (2012) 80–85.
  7. References7. Y. Temerk, M. Ibrahim, H. Ibrahim, and M. Kotb, Interactions of an anticancer drug Formestane with single and double stranded DNA at physiological conditions, J Photochem Photobiol B., 149 (2012) 27–36.
  8. References8. L. J. Marnett and A. S. Kalgutkar, Design of selective inhibitors of cyclooxygenase-2 as nonulcerogenic anti-inflammatory agents, Curr. Opin. Chem. Biol., 2 (1998) 482–490.
  9. References9. A. S. Kalgutkar, A. B. Marnett, B. C. Crews, R. P. Remmel, and L. J. Marnett, Ester and amide derivatives of the nonsteroidal antiinflammatory drug, indomethacin, as selective cyclooxygenase-2 inhibitors, J. Med. Chem., 43 (2000) 2860–2870.
  10. References10. Y. C. Kim, Y. Karton, X. D. Ji, N. Melman, J. Linden, and K. A. Jacobson, Acyl‐hydrazide derivatives of a xanthine carboxylic congener (XCC) as selective antagonists at human A2B adenosine receptors, Drug Dev. Res., 47 (1999) 178–188.
  11. References11. M. Nakka, M.S. Begum, B.F.M. Varaprasad, L.V. Reddy, A. Bhattacharya, M. Helliwell, Naproxen and ibuprofen based acyl hydrazone derivatives: Synthesis, structure analysis and cytotoxicity studies. J Chem Pharm Res. 2 (2010) 393-409.
  12. References12. D. Sarigol, A. Uzgoren-Baran, B.C. Tel, E.I. Somuncuoglu, I. Kazkayasi, K. Ozadali-Sari, et al., Novel thiazolo [3, 2-b]-1, 2, 4-triazoles derived from naproxen with analgesic/anti-inflammatory properties: Synthesis, biological evaluation and molecular modeling studies, Bioorg Med Chem. 23 (2015) 2518–2528.
  13. References20. Y.T. Sun, S.Y. Bi, D.Q. Song, C.Y. Qiao, D. Mu, H.Q. Zhang, Study on the interaction mechanism between DNA and the main active components in Scutellaria baicalensis Georgi, Sensor Actuat B-Chem., 129 (2008) 799-810.
  14. References14. G.M. Morris, R. Huey, W. Lindstrom, M.F. Sanner, R.K. Belew, D.S. Goodsell, et al. AutoDock4 and AutoDockTools4: Automated Docking with Selective Receptor Flexibility. J Comput Chem., 30 (2009) 2785-2791.
  15. References15. J.R. Lakowicz, Plasmonics in biology and plasmon-controlled fluorescence, Plasmonics, 1 (2006) 5-33.
  16. References16. Y.Q. Wang, H.M. Zhang, G.C. Zhang, Studies of the interaction between palmatine hydrochloride and human serum albumin by fluorescence quenching method, J Pharmaceut Biomed., 41 (2006) 1041-1046.
  17. References17. M. Wu, W. Wu, X. Lian, X. Lin, and Z. Xie, Synthesis of a novel fluorescent probe and investigation on its interaction with nucleic acid and analytical application, Spectrochim Acta A Mol Biomol Spectrosc., 71 (2008) 1333–1340.
  18. References18. H. G. Li, Z. Y. Yang, B. D. Wang, and J. C. Wu, Synthesis, crystal structure, antioxidation and DNA-binding properties of the Ln complexes with 1-phenyl-3-methyl-5-hydroxypyrazole-4-carbaldhyde-(benzoyl) hydrazone, J. Organomet. Chem., 695 (2010) 415–422.
  19. References19. I. Ahmad, A. Ahmad, M. Ahmad, Binding properties of pendimethalin herbicide to DNA: multispectroscopic and molecular docking approaches, Phys Chem Chem Phys., 18 (2016) 6476-85.
  20. References21. P.D. Ross, S. Subramanian, Thermodynamics of Protein Association Reactions - Forces Contributing to Stability, Biochemistry-Us, 20 (1981) 3096-102.
  21. References22. S.Y. Bi, L.L. Yan, Y.T. Sun, H.Q. Zhang, Investigation of ketoprofen binding to human serum albumin by spectral methods, Spectrochim Acta A., 78 (2011) 410-414.