Dergiler / Turkish Journal of Medical Sciences / 2019 / Cilt: 49 - Sayı: 1

In silico design and in vitro development of a highly accurate test to detect Brucella species

Sayfa
368–374
Yayın Tarihi
2022-11-04
DOI
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Thedesirable bands were observed in clinical samples with high accuracy.Conclusion: It should be pointed out that using a precisely designed primer pair would bring about early infection detection, moresuccess to detect all natural variants and higher cost-to-efficacy ratio in comparison to other detection methods.

📌 3 Maddede Bu Makale

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Amaç & Hipotez:Background: Conventional methods of detecting Brucella spp. suffer from technical and biological complications.
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Temel Bulgular & Veri:Therefore,a more accurate PCR-based test seems to be imminently needed.Materials and methods: Blood samples were collected from 39 patients diagnosed with brucellosis and 25 healthy controls.
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Sonuç & Katkı:Thedesirable bands were observed in clinical samples with high accuracy.Conclusion: It should be pointed out that using a precisely designed primer pair would bring about early infection detection, moresuccess to detect all natural variants and higher cost-to-efficacy ratio in comparison to other detection methods.
🔬Tür:Araştırma Makalesi
📍Kapsam:Genişletilmiş Akademik Örneklem
⚙️Değişkenler:Alan Parametreleri

Abstract

Background: Conventional methods of detecting Brucella spp. suffer from technical and biological complications. Besides, newlycharacterized species of the genus Brucella could be neglected by previously designed polymerase chain reaction (PCR) tests. Therefore,a more accurate PCR-based test seems to be imminently needed.Materials and methods: Blood samples were collected from 39 patients diagnosed with brucellosis and 25 healthy controls. Multiplesequence alignments (MSA) were performed on 500 Omp2-related protein and gene sequences. Thereafter, specific primers weredesigned and synthesized for the regions with highest conservancy. The collected samples were assessed by PCR test. To overcome thecross-reactivity issue, PCR thermal program was optimized regarding annealing time and temperature.Results: The MSA results indicated that the N terminus region of the Omp2 protein (DNA 5’ end) is associated with highest conservancy.Primers with highest specificity were designed and synthesized. A two-step PCR reaction was successfully designed and optimized. Thedesirable bands were observed in clinical samples with high accuracy.Conclusion: It should be pointed out that using a precisely designed primer pair would bring about early infection detection, moresuccess to detect all natural variants and higher cost-to-efficacy ratio in comparison to other detection methods.

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Bu Makaleye Atıf Yap

TAVAKOLI, S., SHAHNAZARI, S., SAFARI, H., MARD-SOLTANI, M., KHALESI, B. (2022). In silico design and in vitro development of a highly accurate test to detect Brucella species. Turkish Journal of Medical Sciences, Cilt: 49 - Sayı: 1, 368–374. https://ajindex.com/articles/610111

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Kaynakça (13)

  1. de Figueiredo P, Ficht TA, Rice-Ficht A, Rossetti CA, Adams LG. Pathogenesis and immunobiology of brucellosis: review of brucella–host interactions. Am J Pathol 2015; 185: 1505-1517
  2. Abbas AK, Lichtman AH, Pillai S. Cellular and Molecular Immunology E-Book: Elsevier Health Sciences; 2014
  3. O’callaghan D, Whatmore AM. Brucella genomics as we enter the multi-genome era. Briefings Funct Genomics 2011; 10: 334-341
  4. Cutler SJ. Brucella: molecular and cellular biology I. LopezGoni and I. Moriyon, Eds. Horizon Bioscience, Wymondham, UK, 2004. ISBN 1-904933-04-1.£ 90.00, 432 pp. [Review of the book Brucella: Molecular and Cellular Biology]. Journal of Antimicrobial Chemotherapy 2005; 56: 443-444
  5. Al Dahouk S, Tomaso H, Nöckler K, Neubauer H, Frangoulidis D. Laboratory-based diagnosis of brucellosis--a review of the literature. Part II: serological tests for brucellosis. Clin Lab 2003; 49: 577-589
  6. Adlimoghadam A, Hedayati M, Siadat S, Ahmadi H, Nejati M, Vandyousefi J, Norouzion D. Optimization of PCR conditions for detection of human brucellosis from human serum samples. Res J Microbiol 2008; 3: 352-358
  7. Bricker BJ. PCR as a diagnostic tool for brucellosis. Vet Microbiol 2002; 90: 435-446
  8. Gee JE, De BK, Levett PN, Whitney AM, Novak RT, Popovic T. Use of 16S rRNA gene sequencing for rapid confirmatory identification of Brucella isolates. J Clin Microbiol 2004; 42: 3649-3654
  9. Rijpens NP, Jannes G, Van Asbroeck M, Rossau R, Herman L. Direct detection of Brucella spp. in raw milk by PCR and reverse hybridization with 16S-23S rRNA spacer probes. Appl Environ Microbiol 1996; 62: 1683-1688
  10. Keid L, Soares R, Vieira N, Megid J, Salgado V, Vasconcellos S, Da Costa M, Gregori F, Richtzenhain L. Diagnosis of canine brucellosis: comparison between serological and microbiological tests and a PCR based on primers to 16S-23S rDNA interspacer. Vet Res Commun 2007; 31: 951-965
  11. Khalili S, Zakeri A, Hashemi ZS, Masoumikarimi M, Manesh MRR, Shariatifar N, Sani MJ. Structural analyses of the interactions between the thyme active ingredients and human serum albumin. Turk J Biochem 2017; 42: 459-467
  12. Khalili S, Jahangiri A, Hashemi ZS, Khalesi B, Mardsoltani M, Amani J. Structural pierce into molecular mechanism underlying Clostridium perfringens Epsilon toxin function. Toxicon 2017; 127: 90-99
  13. Khalili S, Rasaee M, Bamdad T. 3D structure of DKK1 indicates its involvement in both canonical and non-canonical Wnt pathways. Mol Biol 2017; 51: 15