Dergiler / Turkish Journal of Medical Sciences / 2019 / Cilt: 49 - Sayı: 2

Characterization and haplotype study of 6 novel STR markers related to the KCNQ1 gene in heterogeneous cardiovascular disorders in the Iranian population

Sayfa
453–457
Yayın Tarihi
2022-11-05
DOI
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Five of the markers meet Hardy–Weinberg equilibrium.Conclusion: A novel panel of STR markers was described with high allele heterozygosity and segregation in every locus, which maylead to faster and more credible recognition of the disease-inducing KCNQ1 gene and allow it to be used for human identity testing andprenatal diagnosis.

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Amaç & Hipotez:Abstract: Background/aim: The KCNQ1 gene has a significant role in long QT syndrome, Jervell and Lange-Nielsen syndrome, familialatrial fibrillation, and short QT syndrome.
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Temel Bulgular & Veri:Analyzing such heterogeneous disorders, six novel short tandem repeat (STR) markersaround the KCNQ1 gene were found and evaluated in a healthy population, and other statistical traits of the markers were detected.Materials and methods: Using Tandem Repeats Finder (TRF) and Sequence-Based Estimation of Repeat Variability (SERV) software,STR markers were detected with valid tetra- and pentanucleotide repeats.
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Sonuç & Katkı:Five of the markers meet Hardy–Weinberg equilibrium.Conclusion: A novel panel of STR markers was described with high allele heterozygosity and segregation in every locus, which maylead to faster and more credible recognition of the disease-inducing KCNQ1 gene and allow it to be used for human identity testing andprenatal diagnosis.
🔬Tür:Araştırma Makalesi
📍Kapsam:Genişletilmiş Akademik Örneklem
⚙️Değişkenler:Alan Parametreleri

Abstract

Abstract: Background/aim: The KCNQ1 gene has a significant role in long QT syndrome, Jervell and Lange-Nielsen syndrome, familialatrial fibrillation, and short QT syndrome. Analyzing such heterogeneous disorders, six novel short tandem repeat (STR) markersaround the KCNQ1 gene were found and evaluated in a healthy population, and other statistical traits of the markers were detected.Materials and methods: Using Tandem Repeats Finder (TRF) and Sequence-Based Estimation of Repeat Variability (SERV) software,STR markers were detected with valid tetra- and pentanucleotide repeats. The markers were investigated for a total of 60 unrelatedIranian healthy individuals and analyzed using GenAlEx 6.502 and Cervus 3.0.7.Results: A total of 77 haplotypes was detected, of which 25 haplotypes were unique and the others occurred at least two times. Thenumber of haplotypes per locus ranged from 7 to 18 with the highest frequency of 69.2%, and the observed heterozygosity was calculatedas 0.589. The power of discrimination ranged from 0.70 to 0.96. Five of the markers meet Hardy–Weinberg equilibrium.Conclusion: A novel panel of STR markers was described with high allele heterozygosity and segregation in every locus, which maylead to faster and more credible recognition of the disease-inducing KCNQ1 gene and allow it to be used for human identity testing andprenatal diagnosis.

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Bu Makaleye Atıf Yap

ZAFARI, Z., KARIMIPOOR, M., ZEINALI, S., AMIRIAN, A., KORDAFSHARI, A., SHARIFI, Z. (2022). Characterization and haplotype study of 6 novel STR markers related to the KCNQ1 gene in heterogeneous cardiovascular disorders in the Iranian population. Turkish Journal of Medical Sciences, Cilt: 49 - Sayı: 2, 453–457. https://ajindex.com/articles/609961

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Kaynakça (15)

  1. Deal KK, England SK, Tamkun MM. Molecular physiology of cardiac potassium channels. Physiological Reviews 1996; 76: 49-67
  2. Larsen LA, Fosdal I, Andersen PS, Kanters JK, Vuust J et al. Recessive Romano-Ward syndrome associated with compound heterozygosity for two mutations in the KVLQT1 gene. European Journal of Human Genetics 1999; 7: 724-728
  3. Ning L, Moss AJ, Zareba W, Robinson J, Rosero S et al. Novel compound heterozygous mutations in the KCNQ1 gene associated with autosomal recessive long QT Syndrome (Jervell and Lange‐Nielsen syndrome). Annals of Noninvasive Electrocardiology 2003; 8: 246-250
  4. Priori SG, Schwartz PJ, Napolitano C, Bianchi L, Dennis A et al. A recessive variant of the Romano-Ward long-QT syndrome? Circulation 1998; 97: 2420-2425
  5. Hedley PL, Jørgensen P, Schlamowitz S, Wangari R, Moolman‐ Smook J et al. The genetic basis of long QT and short QT syndromes: a mutation update. Human Mutation 2009; 30: 1486-1511
  6. Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA. Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Research 2005; 33: D514-D517
  7. Landrum MJ, Lee JM, Benson M, Brown G, Chao C et al. ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Research 2015; 44: D862-D868
  8. Jeffreys AJ. Complex gene conversion events in germline mutation at human minisatellites. Trends in Genetics 1994; 10: 151
  9. Butler JM. Forensic DNA Typing: Biology & Technology Behind STR Markers. San Diego, CA, USA: Academic Press; 2001
  10. Agrawal S, Khan F, Talwar S, Nityanand S. Short tandem repeat technology has diverse applications: individual identification, phylogenetic reconstruction and chimerism based post haematopoietic stem cell transplantation graft monitoring. Indian Journal of Medical Sciences 2004; 58: 297-304
  11. Haas J, Frese KS, Peil B, Kloos W, Keller A et al. Atlas of the clinical genetics of human dilated cardiomyopathy. European Heart Journal 2014; 36: 1123-1135
  12. Hearne CM, Ghosh S, Todd JA. Microsatellites for linkage analysis of genetic traits. Trends in Genetics 1992; 8: 288-294
  13. Benson G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Research 1999; 27: 573
  14. Legendre M, Pochet N, Pak T, Verstrepen KJ. Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Research 2007; 17: 1787-1796
  15. Peakall R, Smouse PE. GENALEX 6: Genetic Analysis