Dergiler / Turkish Journal of Botany / 2019 / Cilt: 43 - Sayı: 2

Genome size variation among natural populations of Brachypodium distachyon and B. hybridum collected from different regions of Turkey

Sayfa
196–207
Yayın Tarihi
2022-11-04
DOI
—
🏛️Bu makalenin bibliyografik verileri ve tam metin bağlantısı DergiPark üzerinden sağlanmıştır.
DergiPark Kaydı ↗
✨

Yapay Zeka Hızlı Bakış & Çıkarımlar

AI Insight
⚡ TL;DR(1 Cümlede Hızlı Çıkarım)

On the other hand, localization and altitude did not have any statistically significant effect ongenome size in B. hybridum.

📌 3 Maddede Bu Makale

🎯
Amaç & Hipotez:Brachypodium distachyon (L.) P.Beauv. is a model grass species that is useful for studying temperate cereal, forage, and energycrops.
📊
Temel Bulgular & Veri:In this study we aimed to determine the genome size and species identity in the collections of the B. distachyon complex thatincluded samples from 56 different locations in Turkey, applying chromosome counting and nuclear genome size evaluation by flowcytometry method (FCM).
💡
Sonuç & Katkı:On the other hand, localization and altitude did not have any statistically significant effect ongenome size in B. hybridum.
🔬Tür:Modelleme & Sayısal Simülasyon
📍Kapsam:Genişletilmiş Akademik Örneklem
⚙️Değişkenler:Alan Parametreleri

Abstract

Brachypodium distachyon (L.) P.Beauv. is a model grass species that is useful for studying temperate cereal, forage, and energycrops. In this study we aimed to determine the genome size and species identity in the collections of the B. distachyon complex thatincluded samples from 56 different locations in Turkey, applying chromosome counting and nuclear genome size evaluation by flowcytometry method (FCM). Moreover, the study examined whether diverse geographical conditions at the collecting sites influencethe genome size. Chromosomal analysis revealed that the number of B. distachyon (x = 5, 2n = 10) genotypes was 48 and the numberof B. hybridum (x = 5 + 10, 2n = 30) ones was 11. No genotypes of B. stacei were found. FCM analyses revealed that the minimumand maximum genome size of B. distachyon was 0.732 and 0.752 pg2C–1, respectively. The mean genome size of B. distachyon was0.743 pg2C–1. The mean genome size of B. hybridum was 1.431 pg2C–1 with the minimum 1.417 pg2C–1 and maximum 1.451 pg2C–1.Intraspecific variation in the genome size was identified for both species. It was determined that geographical origin (localization,altitude) had a statistically significant effect on genome size in B. distachyon. In addition, a negative correlation was found betweenaltitude and genome size in this species. On the other hand, localization and altitude did not have any statistically significant effect ongenome size in B. hybridum.

🔖

Bu Makaleye Atıf Yap

BAŞER, İ., TUNA, G. S., TUNA, M. (2022). Genome size variation among natural populations of Brachypodium distachyon and B. hybridum collected from different regions of Turkey. Turkish Journal of Botany, Cilt: 43 - Sayı: 2, 196–207. https://ajindex.com/articles/600903

📄 Tam Metin PDF Okuyucu

📄

PDF görüntüleyici hazırlanıyor...

Kaynakça (7)

  1. Bareither N, Scheffel A, Metz J (2017). Distribution of polyploid plants in the common annual Brachypodium distachyon (s.l.) in Israel is not linearly correlated with aridity. Isr J Plant Sci DOI: 10.1080/07929978.2017.1288406. Bennett MD (1987). Variation in genomic form in plants and its ecological implications. New Phytol 106: 177-200.
  2. Bennett MD, Leitch IJ (2005). Plant genome size research: a field in focus. Ann Bot 95: 1-6.
  3. Betekhtin A, Jenkins G, Hasterok R (2014). Reconstructing the evolution of Brachypodium genomes using comparative chromosome painting. Plos One 9: e115108. Budak H, Hernandez P, Schulman AH (2014). Analysis and exploitation of cereal genomes with the aid of Brachypodium. In: Tuberosa R, Graner A, Frison E, editors. Genomics of Plant Genetic Resources: Volume 1. Managing, Sequencing and Mining Genetic Resources, 1st ed. New York, NY, USA: Springer, pp. 585-613. Catalán P, Chalhoub B, Chochois V, Garvin DF, Hasterok R, Manzaneda AJ, Mur LA, Pecchioni N, Rasmussen SK, Vogel JP et al. (2014). Update on the genomics and basic biology of Brachypodium. Trends Plant Sci 19: 414-418. Catalán P, López-Álvarez D, Bellosta C, Villar L (2016a). Updated taxonomic descriptions, iconography, and habitat preferences of Brachypodium distachyon, B. stacei, and B. hybridum (Poaceae). An Jardin Bot Madrid 73: e028. Catalán P, López-Álvarez D, Díaz-Pérez A, Sancho R, LópezHerránz ML (2016b). Phylogeny and evolution of the genus Brachypodium. In: Vogel J, editor. Genetics and genomics of Brachypodium. Series Plant Genetics and Genomics: Crops Models. New York, NY, USA: Springer, pp. 9-38. Catalán P, Müller J, Hasterok R, Jenkins G, Mur LA, Langdon T, Betekhtin A, Siwinska D., Pimentel M, López-Alvarez D (2012). Evolution and taxonomic split of the model grass Brachypodium distachyon (L.) P. Beauv. Ann Bot 109: 385-405.
  4. Chia JM, Song C, Bradbury PJ, Costich D, De Leon N, Elshire JR, Gaut B, Geller L, Glaubitz J, Gore M et al. (2012). Maize hapmap2 identifies extant variation from a genome in flux. Nature Genet 44:803-838.
  5. Ceccarelli M, Falisfocco E, Cionini PG (1992). Variation in genome size and organisation within hexaploid Festuca arundinaceae. Theor Appl Genet 83: 273-278.
  6. Creber HMC, Davies MS, Francis D, Walker HD (1994). Variation in DNA C value in natural populations of Dactylis glomerata L. New Phytol 128: 555-561.
  7. Dinh Thi VH, Coriton O, Le Clainche I, Arnaud D, Gordon SP, Linc G, Catalan P, Hasterok R, Vogel JP, Jahier J et al. (2016). Recreat