Dergiler / Communications Faculty of Sciences University of Ankara Series C Biology / 2025 / Volume: 34 Issue: 2

Molecular interactions between circadian gene TIMELESS and BCG immunization

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Yayın Tarihi
2025-12-26
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⚡ TL;DR(1 Cümlede Hızlı Çıkarım)

Understanding TIMELESS's role may support the development of circadian-based vaccine strategies to improve TB control and vaccine effectiveness.

📌 3 Maddede Bu Makale

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Amaç & Hipotez:Tuberculosis (TB) remains a major global health issue, causing 1.3 million deaths each year.
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Temel Bulgular & Veri:This study explores TIMELESS's role in shaping immune responses to BCG stimulation and considers whether aligning vaccination with circadian cycles might improve efficacy HEK293T cells were genetically edited using CRISPR/Cas9 to knock out the TIMELESS gene.
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Sonuç & Katkı:Understanding TIMELESS's role may support the development of circadian-based vaccine strategies to improve TB control and vaccine effectiveness.
🔬Tür:Research Article
📍Kapsam:Genişletilmiş Akademik Örneklem
⚙️Değişkenler:Circadian rhythm · TIMELESS · miRNA

Abstract

Tuberculosis (TB) remains a major global health issue, causing 1.3 million deaths each year. Although BCG vaccination coverage is high, its effectiveness in preventing adult TB is limited, especially with the rise of drug-resistant strains. Circadian rhythms, regulated by clock proteins such as TIMELESS, influence immune responses and other biological functions. This study explores TIMELESS's role in shaping immune responses to BCG stimulation and considers whether aligning vaccination with circadian cycles might improve efficacy HEK293T cells were genetically edited using CRISPR/Cas9 to knock out the TIMELESS gene. These cells were then stimulated with BCG, and gene expression was assessed using the RT² Profiler™ PCR Array (Human Innate & Adaptive Immune Responses). Additionally, in silico tools were used to analyze TIMELESS's evolutionary relationships, structural features, and miRNA interactions.BCG stimulation led to a 90% increase in immune gene expression. Most immune genes were downregulated in TIMELESS knockout cells without BCG, except CD8A, which increased 1.97-fold. When knockout cells were stimulated with BCG, CD40, CD40LG, and SLC11A1 increased expression, indicating enhanced T-cell and macrophage activation. These findings suggest that TIMELESS is crucial for proper immune function during BCG stimulation. Its absence alters key immune pathways, particularly CD40-CD40LG and SLC11A1-related responses. Understanding TIMELESS's role may support the development of circadian-based vaccine strategies to improve TB control and vaccine effectiveness.

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Bu Makaleye Atıf Yap

Okay, A., Atasoy, B. T., Soydam, S. (2025). Molecular interactions between circadian gene TIMELESS and BCG immunization. Communications Faculty of Sciences University of Ankara Series C Biology, Volume: 34 Issue: 2. https://doi.org/10.53447/communc.1684471

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Kaynakça (44)

  1. Zumla, A.I., Gillespie, S.H., Hoelscher, M., Philips, P.P., Cole, S.T., Abubakar, I., McHugh, T.D., Schito, M., Maeurer, M., Nunn, A.J., New antituberculosis drugs, regimens, and adjunct therapies: needs, advances, and future prospects. Lancet Infections Diseases, 14 (2014), 327–340. https://doi.org/10.1016/S1473-3099(13)70328-1
  2. Goletti, D., Meintjes, G., Andrade, B.B., Zumla, A., Shan Lee, S., Insights from the 2024 WHO Global Tuberculosis Report – More comprehensive action, innovation, and investments required for achieving WHO End TB goals. International Journal of Infections Diseases, 150 (2025), 107325. https://doi.org/10.1016/j.ijid.2024.107325
  3. Soto, J.A., Gálvez, N.M.S., Andrade, C.A., Ramírez, M.A., Riedel, C.A., Kalergis, A.M., Bueno, S.M., BCG vaccination induces cross-protective immunity against pathogenic microorganisms. Trends in Immunology, 43 (2022), 322–335. https://doi.org/10.1016/j.it.2021.12.006
  4. Dow, C.T., Kidess, L., BCG Vaccine – The Road Not Taken. Microorganisms, 10 (2022), 1919. https://doi.org/10.3390/microorganisms10101919
  5. Liu, X., Li, H.R., Li, S.S., Yuan, J.F., Pang, Y., Maintenance and recall of memory T cell populations against tuberculosis: implications for vaccine design. Front Immunology, 14 (2023), 1100741. https://doi.org/10.3389/fimmu.2023.1100741
  6. Bettencourt, P.J.G., Joosten, S.A., Arlehamn, C.S.L., Behr, M.A., Locht, C., Neyrolles, O., 100 years of the Bacillus Calmette–Guérin vaccine. Vaccine, 39 (2021), 7221–7222. https://doi.org/10.1016/j.vaccine.2021.11.038
  7. Covián, C., Fernández-Fierro, A., Retamal-Díaz, A., Díaz, F.E., Vasquez, A.E., Lay, M.K., Riedel, C.A., González, P.A., Bueno, S.M., Kalergis, A.M., BCG-induced cross-protection and development of trained immunity: implications for vaccine design. Front Immunology, 10 (2019), 2806. https://doi.org/10.3389/fimmu.2019.02806
  8. DiNardo, A.R., Netea, M.G., Musher, D.M., Postinfectious epigenetic immune modifications a double-edged sword. New England Journal of Medicine, 384 (2021), 261–270. https://doi.org/10.1056/NEJMra2028358
  9. Meléndez-Fernández, O.H., Liu, J.A., Nelson, R.J., Circadian rhythms disrupted by light at night and mistimed food intake alter hormonal rhythms and metabolism. International Journal of Molecular Sciences, 24 (2023), 3392. https://doi.org/10.3390/ijms24043392
  10. Ince, L.M., Weber, J., Scheiermann, C., Control of leukocyte trafficking by stress-associated hormones. Front Immunology, 9 (2019), 3143. https://doi.org/10.3389/fimmu.2018.03143
  11. Nguyen, K.D., Fentress, S.J., Qiu, Y.F., Yun, K.R., Cox, J.S., Chawla, A., Circadian gene regulates diurnal oscillations of Ly6C inflammatory monocytes. Science, 341 (2013), 1483–1488. https://doi.org/10.1126/science.1240636
  12. Gibbs, J.E., Blaikley, J., Beesley, S., Matthews, L., Simpson, K.D., Boyce, S.H., Farrow, S.N., Else, K.J., Singh, D., Ray, D.W., Loudon, A.S.I., The nuclear receptor REV-ERBα mediates circadian regulation of innate immunity through selective regulation of inflammatory cytokines. Proceedings of National Academy Science USA, 109 (2012), 582–587. https://doi.org/10.1073/pnas.1106750109
  13. Netea, M.G., Joosten, L.A., Latz, E., Mills, K.H., Natoli, G., Stunnenberg, H.G., O’Neill, L.A., Xavier, R.J., Trained immunity: a program of innate immune memory in health and disease. Science, 352 (2016), aaf1098. https://doi.org/10.1126/science.aaf1098
  14. de Bree, L.C.J., Mourits, V.P., Koeken, V.A., Moorlag, S.J., Janssen, R., Folkman, L., Barreca, D., Krausgruber, T., Fife-Gernedl, V., Novakovic, B., Arts, R.J., Dijkstra, H., Lemmers, H., Bock, C., Joosten, L.A., van Crevel, R., Benn, C.S., Netea, M.G., Circadian rhythm influences induction of trained immunity by BCG vaccination. Journal of Clinical Investigation, 130 (2020), 5603–5617. https://doi.org/10.1172/JCI133934
  15. Bjarnason, G.A., Jordan, R., Circadian variation of cell proliferation and cell cycle protein expression in man: clinical implications. Progress in Cell Cycle Research, 4 (2000), 193–206. https://doi.org/10.1007/978-1-4615-4253-7_17
  16. Mendell, J.T., Olson, E.N., MicroRNAs in stress signaling and human disease. Cell, 148 (2012), 1172–1187. https://doi.org/10.1016/j.cell.2012.02.005
  17. Kaufmann, E., Sanz, J., Dunn, J.L., Khan, N., Mendonca, L.E., Pacis, A., Tzelepis, F., Pernet, E., Dumaine, A., Grenier, J.C., Mailhot-Leonard, F., Ahmed, E., Belle, J., Besla, R., Mazer, B., King, I.L., Nijnik, A., Robbins, C.S., Barreiro, L.B., Divangahi, M., BCG educates hematopoietic stem cells to generate protective innate immunity against tuberculosis. Cell, 172 (2018), 176–190. https://doi.org/10.1016/j.cell.2017.12.031
  18. Arts, R.J.W., Moorlag, S., Novakovic, B., Li, Y., Wang, S.Y., Oosting, M., Kumar, V., Xavier, R.J., Wijmenga, C., Joosten, L.A.B., Reusken, C., Benn, C.S., Aaby, P., Koopmans, M.P., Stunnenberg, H.G., van Crevel, R., Netea, M.G., BCG vaccination protects against experimental viral infection in humans through the induction of cytokines associated with trained immunity. Cell Host Microbe, 23 (2018), 89–100. https://doi.org/10.1016/j.chom.2017.12.010
  19. Tamura, K., Stecher, G., Kumar, S., MEGA11: Molecular evolutionary genetics analysis version 11. Molecular Biology Evolution, 38 (2021), 3022–3027. https://doi.org/10.1093/molbev/msab120
  20. Bailey, T.L., Boden, M., Buske, F.A., Frith, M., Grant, C.E., Clementi, L., Ren, J.Y., Li, W.W., Noble, W.S., Meme Suıte: tools for motif discovery and searching. Nucleic Acids Research, 37 (2009), W202–W208. https://doi.org/10.1093/nar/gkp335
  21. Chen, Y.H., Wang, X.W., miRDB: an online database for prediction of functional microRNA targets. Nucleic Acids Research, 48 (2020), D127–D131. https://doi.org/10.1093/nar/gkz757
  22. Smoot, M.E., Ono, K., Ruscheinski, J., Wang, P.L., Ideker, T., Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics, 27 (2011), 431–432. https://doi.org/10.1093/bioinformatics/btq675
  23. Chen, F., Zhang, G., Iwamoto, Y., See, W.A., BCG directly induces cell cycle arrest in human transitional carcinoma cell lines as a consequence of integrin cross-linking. BMC Urology, 5 (2005), 8. https://doi.org/10.1186/1471-2490-5-8
  24. Livak, K.J., Schmittgen, T.D., Analysis of relative gene expression data using real-time quantitative PCR and the 2(-ΔΔCT) method. Methods, 25 (2001), 402–408. https://doi.org/10.1006/meth.2001.1262
  25. Zhang, R., Lahens, N.F., Ballance, H.I., Hughes, M.E., Hogenesch, J.B., A circadian gene expression atlas in mammals: implications for biology and medicine. Proceedings National Academy of Sciences USA, 111 (2014), 16219–16224. https://doi.org/10.1073/pnas.1408886111
  26. Silver, A.C., Arjona, A., Walker, W.E., Fikrig, E., The circadian clock controls toll-like receptor 9-mediated innate and adaptive immunity. Immunity, 36 (2012), 251–261. https://doi.org/10.1016/j.immuni.2011.12.017
  27. Liu, F.J., Li, X.L., Liu, P.Y., Quan, X.W., Zheng, C., Zhou, B.S., Association between three polymorphisms in genes and risk of lung cancer in a northeast Chinese population. DNA Cell Biology, 38 (2019), 1437–1443. https://doi.org/10.1089/dna.2019.4853
  28. Vipat, S., Moiseeva, T.N., The TIMELESS roles in genome stability and beyond. Journal of Molecular Biology, 436 (2024), 168206. https://doi.org/10.1016/j.jmb.2023.168206
  29. Duan, X.J., Wang, L.H., Sun, G.B., Yan, W.Y., Yang, Y., Understanding the cross-talk between host and virus in poultry from the perspectives of microRNA. Poultry Science, 99 (2020), 1838–1846. https://doi.org/10.1016/j.psj.2019.11.053
  30. Duecker, R.P., Messa, I.D., Jerkic, S.P., Kochems, A., Gottwald, G., Moreno-Galdó, A., Rosewich, M., Gronau, L., Zielen, S., Geburtig-Chiocchetti, A., Kreyenberg, H., Schubert, R., Epigenetic regulation of inflammation by microRNAs in post-infectious bronchiolitis obliterans. Clinical Translational Immunology, 11 (2022), e1376. https://doi.org/10.1002/cti2.1376
  31. Jiao, G.M., Huang, Q., Hu, M.R., Liang, X.C., Li, F.C., Lan, C.L., Fu, W.C., An, Y., Xu, B., Zhou, J.Z., Xiao, J.J., Therapeutic suppression of miR-4261 attenuates colorectal cancer by targeting MCC. Molecular Therapy Nucleic Acids, 8 (2017), 121–132. https://doi.org/10.1016/j.omtn.2017.05.010
  32. Zhou, X., Li, X., Wu, M., miRNAs reshape immunity and inflammatory responses in bacterial infection. Signal Transduct Target Therapy, 3 (2018), 14. https://doi.org/10.1038/s41392-018-0006-9
  33. Lee, H.M., Kim, T.S., Jo, E.K., MiR-146 and miR-125 in the regulation of innate immunity and inflammation. BMB Reports, 49 (2016), 311–318. https://doi.org/10.5483/bmbrep.2016.49.6.056
  34. Branger, J., Leemans, J.C., Florquin, S., Weijer, S., Speelman, P., van der Poll, T., Toll-like receptor 4 plays a protective role in pulmonary tuberculosis in mice. International Immunology, 16 (2004), 509–516. https://doi.org/10.1093/intimm/dxh052
  35. Sun, Z., Yuan, W., Li, L.H., Cai, H.H., Mao, X., Zhang, L.L., Zang, G.Y., Wang, Z.Q., Macrophage CD36 and TLR4 cooperation promotes foam cell formation and VSMC migration and proliferation under circadian oscillations. Journal Cardiovascular Translations Research, 15 (2022), 985–997. https://doi.org/10.1007/s12265-022-10225-0
  36. Hedges, J.F., Kimmel, E., Snyder, D.T., Jerome, M., Jutila, M.A., Solute carrier 11A1 is expressed by innate lymphocytes and augments their activation. Journal Immunology, 190 (2013), 4263–4273. https://doi.org/10.4049/jimmunol.1200732
  37. Meng, C.Q., Chen, G.X., Wen, D., Dong, L., Cui, X.G., Jing, X.J., Cui, J., Gao, Y.T., Liu, Y., Bu, H.L., Wu, C.X., The expression of Nramp1 modulates the uptake of by macrophages through alternating inflammatory responses. Tuberculosis, 143 (2023), 102414. https://doi.org/10.1016/j.tube.2023.102414
  38. Li, S., Wang, M., Ao, X., Chang, A.K., Yang, C., Zhao, F., Bi, H., Liu, Y., Xiao, L., Wu, H., CLOCK is a substrate of SUMO and sumoylation of CLOCK upregulates the transcriptional activity of estrogen receptor-α. Oncogene, 32 (2013), 4883–4891. https://doi.org/10.1038/onc.2012.518
  39. Gray, K.J., Gibbs, J.E., Adaptive immunity, chronic inflammation and the clock. Semin Immunopathology, 44 (2022), 209–224. https://doi.org/10.1007/s00281-022-00919-7
  40. Bekkering, G., Delvaux, N., Vankrunkelsven, P., Toelen, J., Aertgeerts, S., Crommen, S., Bruyckere, P., Devisch, I., Lernout, T., Masschalck, K., Milissen, N., Molenberghs, G., Pascal, A., Plomteux, O., Raes, M., Rans, L., Seghers, A., Sweldens, L., Vandenbussche, J., Vanham, G., Wollants, E., Aertgeerts, B., Closing schools for SARS-CoV-2: a pragmatic rapid recommendation. BMJ Paediatrics Open, 5 (2021), e000971. https://doi.org/10.1136/bmjpo-2020-000971
  41. Fohse, K., Taks, E.J.M., Moorlag, S., Bonten, M.J.M., van Crevel, R., Ten Oever, J., van Werkhoven, C.H., Netea, M.G., van de Maat, J.S., Hoogerwerf, J.J., The impact of circadian rhythm on Bacillus Calmette–Guérin vaccination effects on SARS-CoV-2 infections. Front Immunology, 14 (2023), 980711. https://doi.org/10.3389/fimmu.2023.980711
  42. Enriquez, A.B., Sia, J.K., Dkhar, H.K., Goh, S.L., Quezada, M., Stallings, K.L., Rengarajan, J., Impedes CD40-dependent notch signaling to restrict Th1 polarization during infection. iScience, 25 (2022), 104305. https://doi.org/10.1016/j.isci.2022.104305
  43. Jia, Y.H., Wei, Y.Y., Modulators of microRNA function in the immune system. International Journal of Molecular Science, 21 (2020), 2357. https://doi.org/10.3390/ijms21072357
  44. Gao, X.L., Tang, M.B., Tian, S.Y., Li, J.L., Wei, S.X., Hua, S.C., Liu, W., ncRNAs-mediated TIMELESS overexpression in lung adenocarcinoma correlates with reduced tumor immune cell infiltration and poor prognosis. PLoS One, 19 (2024), e0296829. https://doi.org/10.1371/journal.pone.0296829