Journals / Bitlis Eren Üniversitesi Fen Bilimleri Dergisi / 2020 / Cilt: 9 - Sayı: 4

Classifying Protein Sequences Using Convolutional Neural Network

Beton Ağırlıklı Barajların Simbiyotik Arama Algoritması ile Optimizasyonu

Pages
1734–1744
Publication Date
2020-12-25
DOI
—
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AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

As a result, the accuracy with 95.03% was achieved in the classification of protein sequences using ResNet.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:One of the major challenges in bioinformatics is the classification and identification of protein structure and function.
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Key Findings & Data:For this, proteins should be separated according to their structure and families.
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Conclusion & Impact:As a result, the accuracy with 95.03% was achieved in the classification of protein sequences using ResNet.
🔬Design:Modeling & Simulation
📍Scope:Comprehensive Sample
⚙️Variables:Simbiyotik Arama Algoritması · Beton Ağırlık Barajlar · Optimizasyon

Abstract

One of the major challenges in bioinformatics is the classification and identification of protein structure and function. Large amounts of RNA data cannot be managed using traditional laboratory methods. For this, proteins should be separated according to their structure and families. Therefore, proteins need to be classified to define their biological families and functions. In traditional machine learning approaches, various feature extraction algorithms are used to classify proteins. In manual feature extraction, the selected features directly affect performance. Therefore, in the proposed method of this study, protein sequences were digitized by amino acid composition technique. The digitized protein sequences were converted to spectrograms, and automatic feature extraction was performed using 2D CNN models (VGG19, ResNet). The extracted features were classified with SVM and kNN. As a result, the accuracy with 95.03% was achieved in the classification of protein sequences using ResNet.

Özet

Artan nüfus ve sanayileşme suya olan ihtiyacı hıza arttırmaktadır. Bu artış projelerin boyutlarını da arttırmaktadır. Klasik yöntemlerle yapılan projelendirmelerde maliyetler oldukça yüksek çıkabilmektedir. Bu çalışmada su kaynakları projelerinin en önemlilerinden olan beton ağırlıklı barajların Simbiyotik Arama Algoritması (SOS) kullanılarak optimum boyutlarının bulunması amaçlanmıştır. Çalışmada baraj yükseklikleri ve deprem ivmeleri değişimi ile maliyet artışları da ve bu artışların oranları hesaplanmıştır. Elde edilen sonuçlar grafikler ve tablolar ile düzenlenmiştir. Ayrıca çalışmada her girdi parametresi için modelleme yapabilecek bir programda geliştirilmiştir.

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Cite This Article

SAPLIOĞLU, K., ÇOBAN, E., ŞENEL, F. A., UZUNDURUKAN, S. (2020). Classifying Protein Sequences Using Convolutional Neural Network. Bitlis Eren Üniversitesi Fen Bilimleri Dergisi, Cilt: 9 - Sayı: 4, 1734–1744. https://ajindex.com/articles/477448

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References (13)

  1. Datta B., Chakrabarty D., Dhar A. 2011. Identification of unknown groundwater pollution sources using classical optimization with linked simulation. Journal of Hydro-Environment Research, 5(1), 25-36
  2. Anile A. M., Cutello V., Nicosia G., Rascuna, R., Spinella S. 2005, September. Comparison among evolutionary algorithms and classical optimization methods for circuit design problems. In 2005 IEEE Congress on Evolutionary Computation Vol. 1, pp. 765-772. IEEE
  3. Saplıoğlu K., Uzundurukan S. Bilimsel çalışmalarda kullanılan bazı yapay zeka uygulamalarının ve trendlerinin incelenmesi. DÜMF Mühendislik Dergisi, 10(1), 249-262
  4. Geem Z. W. 2007, June. Optimal scheduling of multiple dam system using harmony search algorithm. In International Work-Conference on Artificial Neural Networks pp. 316-323. Springer, Berlin, Heidelberg
  5. Banos R., Manzano-Agugliaro F., Montoya F. G., Gil C., Alcayde, A., Gómez, J. 2011. Optimization methods applied to renewable and sustainable energy: A review. Renewable and sustainable energy reviews, 15(4), 1753-1766
  6. Khatibinia M., Khosravi S. 2014. A hybrid approach based on an improved gravitational search algorithm and orthogonal crossover for optimal shape design of concrete gravity dams. Applied Soft Computing, 16, 223-233
  7. Kshirsagar D. Y. 2014. Effect of variation of earthquake intensity on stability of gravity dam. J Indian Water Resour Soc, 34(3), 1-6
  8. Salmasi F. 2011. Design of gravity dam by genetic algorithms. International Journal of Civil and Environmental Engineering, 3(3), 187-192
  9. Deepika R., Suribabu C. R. 2015. Optimal design of gravity dam using differential evolution algorithm. Iran University of Science Technology, 5(3), 255-266
  10. Seyedpoor S. M., Salajegheh J., Salajegheh E. 2012. Shape optimal design of materially nonlinear arch dams including dam-water-foundation rock interaction using an improved PSO algorithm. Optimization and engineering, 13(1), 79-100
  11. Seyedpoor S. M., Salajegheh J., Salajegheh E., Gholizadeh S. 2011. Optimal design of arch dams subjected to earthquake loading by a combination of simultaneous perturbation stochastic approximation and particle swarm algorithms. Applied Soft Computing, 11(1), 39-48
  12. Akbari J., Ahmadi, M. T., Moharrami H. 2011. Advances in concrete arch dams shape optimization. Applied Mathematical Modelling, 35(7), 3316-3333
  13. Hamidian D., Seyedpoor S. M. 2010. Shape optimal design of arch dams using an adaptive neuro-fuzzy inference syste