Journals / Turkish Journal of Biology / 2021 / Cilt: 45 - Sayı: 3

Identification of differentially expressed microRNAs in primary esophageal achalasia by next-generation sequencing

Pages
262–274
Publication Date
2021-06-23
DOI
—
🏛️Bibliographic metadata and full text access for this article are provided via DergiPark.
DergiPark Record ↗
✨

AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

Our results may serve as a basis for more future functional studies to investigate the role of candidate miRNAs in the etiology of achalasia and their application in the diagnosis and probably treatment of the disease.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:Molecular knowledge regarding the primary esophageal achalasia is essential for the early diagnosis and treatment of this neurodegenerative motility disorder.
📊
Key Findings & Data:This case-control study was performed on 52 patients with achalasia and 50 nonachalasia controls.
💡
Conclusion & Impact:Our results may serve as a basis for more future functional studies to investigate the role of candidate miRNAs in the etiology of achalasia and their application in the diagnosis and probably treatment of the disease.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:Achalasia · microRNA · next-generation sequencing

Abstract

Molecular knowledge regarding the primary esophageal achalasia is essential for the early diagnosis and treatment of this neurodegenerative motility disorder. Therefore, there is a need to find the main microRNAs (miRNAs) contributing to the mechanisms of achalasia. This study was conducted to determine some patterns of deregulated miRNAs in achalasia. This case-control study was performed on 52 patients with achalasia and 50 nonachalasia controls. The miRNA expression profiling was conducted on the esophageal tissue samples using the next-generation sequencing (NGS). Differential expression of miRNAs was analyzed by the edgeR software. The selected dysregulated miRNAs were additionally confirmed using the quantitative reverse transcription polymerase chain reaction (qRT-PCR). Fifteen miRNAs were identified that were significantly altered in the tissues of the patients with achalasia. Among them, three miRNAs including miR-133a-5p, miR-143-3p, and miR-6507-5p were upregulated. Also, six miRNAs including miR-215-5p, miR-216a-5p, miR-216b-5p, miR-217, miR-7641 and miR-194-5p were downregulated significantly. The predicted targets for the dysregulated miRNAs showed significant disease-associated pathways like neuronal cell apoptosis, neuromuscular balance, nerve growth factor signaling, and immune response regulation. Further analysis using qRT-PCR showed significant down-regulation of hsa-miR-217 (p-value = 0.004) in achalasia tissue. Our results may serve as a basis for more future functional studies to investigate the role of candidate miRNAs in the etiology of achalasia and their application in the diagnosis and probably treatment of the disease.

🔖

Cite This Article

GHOLIPOUR, M., MIKAELI, J., MOWLA, S. J., BAKHTIARIZADEH, M. R., JAZI, M. S., JAVID, N., FAZLOLLAHI, N., KHOSHNIA, M., BEHNAMPOUR, N., MORADI, A. (2021). Identification of differentially expressed microRNAs in primary esophageal achalasia by next-generation sequencing. Turkish Journal of Biology, Cilt: 45 - Sayı: 3, 262–274. https://ajindex.com/articles/227758

📄 Full Text PDF Viewer

📄

PDF görüntüleyici hazırlanıyor...

References (3)

  1. Ahmad A, Zhang W, Wu M, Tan S, Zhu T (2018). Tumor-suppressive miRNA-135a inhibits breast cancer cell proliferation by targeting ELK1 and ELK3 oncogenes. Genes & Genomics 40: 243-251. doi: 10.1007/s13258-017-0624-6
  2. Ates F, Vaezi MF (2015). The pathogenesis and management of achalasia: current status and future directions. Gut Liver 9: 449. Bartel DP (2004). MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116: 281-297. doi: 10.1016/S0092-8674(04)00045-5
  3. Bolger A, Lohse M, Usadel B (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30: btu170. doi: 10.1093/bioinformatics/btu170 Chen D, Zhang D, Lu Y, Chen L, Zeng Z et al. (2015). microRNA-217 inhibits tumor progression and metastasis by downregulating EZH2 and predicts favorable prognosis in gastric cancer. Oncotarget 6: 10868. doi: 10.18632/oncotarget.3451 De León A, De La Serna J, Santiago J, Sevilla C, Fernández‐arquero M et al. (2010). Association between idiopathic achalasia and IL23R gene. J Neurogastroenterol Motil 22: 734-e218. doi: 10.1111/j.1365-2982.2010.01497.x Deng M, Tang H, Zhou Y, Zhou M, Xiong W et al. (2011). miR-216b suppresses tumor growth and invasion by targeting KRAS in nasopharyngeal carcinoma. Journalof Cell Science 124: 2997-3005. doi: 10.1242/jcs.085050 Dong S, Yin H, Dong C, Sun K, Lv P et al. (2016). Predictive value of plasma microRNA-216a/b in the diagnosis of esophageal squamous cell carcinoma. Disease Markers 2016. doi: 10.1155/2016/1857067 Dughera L, Chiaverina M, Cacciotella L, Cisarò F (2011). Management of achalasia. Clinical and Experimental Gastroenterology 4: 33. doi: 10.2147/CEG.S11593 Fang Y, Fang D, Hu J (2012). MicroRNA and its roles in esophageal cancer. Medical Science Monitor 18: RA22-RA30. doi: 10.12659/MSM.882509 Farrokhi F, Vaezi MF (2007). Idiopathic (primary) achalasia. Orphanet Journal of Rare Diseases 2: 38. doi: 10.1186/1750-1172-2-38 Friedländer MR, Mackowiak SD, Li N, Chen W, Rajewsky N (2011). miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Research 40: 37-52. doi: 10.1093/nar/gkr688 Furer V, Greenberg JD, Attur M, Abramson SB, Pillinger MH (2010). The role of microRNA in rheumatoid arthritis and other autoimmune diseases. Clinical Immunology 136:1-15. doi: 10.1016/j.clim.2010.02.005 Furuzawa-Carballeda J, Torres-Landa S, Valdovinos MÁ, Coss-Adame E, Del Campo LAM et al. (2016). New insights into the pathophysiology of achalasia and implicati