Journals / Turkish Journal of Agriculture and Forestry / 2020 / Cilt: 44 - Sayı: 2

Association mapping of several nut characters in walnut Juglans regia L.

Pages
208–227
Publication Date
2020-03-01
DOI
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AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

STRUCTURE v.2.2 analysis revealed two possible scenarios K = 3 and K = 5 according to the results of ΔK computation.

📌 3 Key Takeaways

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Objective & Hypothesis:In the current study, significant variations were identified for seven fruit traits of the walnut accessions.
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Key Findings & Data:A total of 16,774 single-nucleotide polymorphism SNP markers based on diversity arrays technology were generated and after filtering the missing data, the remaining 13,611 SNP data were used for genotyping.
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Conclusion & Impact:STRUCTURE v.2.2 analysis revealed two possible scenarios K = 3 and K = 5 according to the results of ΔK computation.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:Walnut · association mapping · diversity arrays technology

Abstract

In the current study, significant variations were identified for seven fruit traits of the walnut accessions. The highest correlations were detected between nut height and nut width, and between nut weight and kernel weight. Most traits had a continuous normal binominal distribution. A total of 16,774 single-nucleotide polymorphism SNP markers based on diversity arrays technology were generated and after filtering the missing data, the remaining 13,611 SNP data were used for genotyping. STRUCTURE v.2.2 analysis revealed two possible scenarios K = 3 and K = 5 according to the results of ΔK computation. While K = 3 indicated that walnut cultivars were clustered into three different groups, K = 5 revealed five different groups. Results of the dendrogram tree analysis were supported by the results presented in the STRUCTURE analysis. A total of 98 association signals were detected with FDR =

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Cite This Article

ORMAN, E., ATEŞ, D., ÖZKURU, E., HEPAKSOY, S., KAFKAS, S., TANYOLAÇ, M. B. (2020). Association mapping of several nut characters in walnut Juglans regia L.. Turkish Journal of Agriculture and Forestry, Cilt: 44 - Sayı: 2, 208–227. https://ajindex.com/articles/179412

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References (4)

  1. Açıkgöz N, İlker E, Gökçöl A (2004). Biyolojik araştırmaların bilgisayarda değerlendirilmeleri. ISBN: 973-483-607-8, E.Ü Totem Y. No 2, İzmir, Turkey (in Turkish) Ahmed N, Mir JJ, Mir RR, Rather NA, Rashid R et al. (2012). SSR and RAPD analysis of genetic diversity in walnut (Juglans regia L.) genotypes from Jammu and Kashmir, India. Physiology and Molecular Biology of Plants 18: 149-160. doi: 10.1007/s12298- 012-0104-z Arzani K, Mansouri‐Ardakan H, Vezvaei A, Roozban MR (2008). Morphological variation among Persian walnut (Juglans regia) genotypes from central Iran. New Zealand Journal of Crop and Horticultural Science 36: 159-168. doi: 10.1080/01140670809510232 Aslantaş R (2006). Identification of superior walnut (Juglans regia) genotypes in north‐eastern Anatolia, Turkey. New Zealand Journal of Crop and Horticultural Science 34: 231-237. doi: 10.1080/01140671.2006.9514412 Asma BM (2012). Pomological and phenological characterization of promising walnut (Juglans regia L.) genotypes from Malatya, Turkey. Acta Scientiarum Polonorum Hortorum Cultus 11: 169-178
  2. Baojun Z, Yonghong G, Liqun H (2009). Overview of walnut culture in China. Proceedings of the VI International Walnut Symposium 861: 39-44
  3. Bayazit S, Kazan K, Gülbitti S, Çevik B, Ayanoğlu H et al. (2007). AFLP analysis of genetic diversity in low chill requiring walnut (Juglans regia L.) genotypes from Hatay, Turkey. Scientia Horticulturae 111: 394-398. doi: 10.1016/j.scienta.2006.11.006 Bradbury PJ, Zhang Z, Kroon DE, Casstevens TM, Ramdoss Y et al. (2007). TASSEL: software for association mapping of complex traits in diverse samples. Bioinformatics 23: 2633-2635. doi:10.1093/bioinformatics/btm308 Cao K, Wang L, Zhu G, Fang W, Chen C et al. (2012). Genetic diversity, linkage disequilibrium, and association mapping analyses of peach (Prunus persica) landraces in China. Tree Genetics & Genomes 8: 975-990. doi: 10.1007/s11295-012- 0477-8
  4. Correa ER, Medeiros GCR, Barros WS, Bianchi VJ (2015). Evaluation and ranking of Macadamia genotypes using mixed models. African Journal of Agricultural Research 10: 3696-3703. doi: 10.5897/AJAR2014.9221 Cosmulescu S, Botu M (2012). Walnut biodiversity in south-western Romania resource for perspective cultivars. Pak J Bot 44: 307- 311 Culligan KM, Hays JB (1997). DNA mismatch repair in plants (an Arabidopsis thaliana gene that predicts a protein belonging to the MSH2 subfamily of eukaryotic MutS homologs). Plant Physiology 115: 833-839. doi:10.1104/pp.115.2.833 Cyr DM,