Journals / Türkiye Uzaktan Algılama Dergisi / 2024 / Volume: 6 Issue: 2

Use of Hyperspectral Data for Chlorophyll Estimation Based on Leaf Area Index (LAI) in Wheat

Buğdayda Yaprak Alanı İndekslerine (LAI) Dayalı Klorofil Tahmini İçin Çok Bantlı (Hiperspektral) Verilerin Kullanımı

Metin Aydoğdu(TARIMSAL ARAŞTIRMALAR VE POLİTİKALAR GENEL MÜDÜRLÜĞÜ TOPRAK GÜBRE VE SU KAYNAKLARI MERKEZ ARAŞTIRMA ENSTİTÜSÜ MÜDÜRLÜĞÜ)0000-0001-6920-1976
Hakan Yıldız(Toprak Gübre ve Su Kaynakları Merkez Araştırma Enstitüsü Müdürlüğü)0000-0002-7627-7503
Pages
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Publication Date
2024-12-30
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AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

This was followed by NDVI670 (LAI=1.904,0.703), NDVI550 (LAI=1.904,0.651) and LCCI (LAI=1.904,0.448).

📌 3 Key Takeaways

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Objective & Hypothesis:Spectral Indices are frequently used in the estimation of green parts of plants, usually developed to reduce the spectral effects of external factors such as atmosphere and soil.
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Key Findings & Data:Spectral reflectance values obtained for different phenological periods were correlated with SPAD (Minolta-502) values and Partial Least Square (PLS) model was used to calculate the prominent hyperspectral indices and their optimal band combinations.
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Conclusion & Impact:This was followed by NDVI670 (LAI=1.904,0.703), NDVI550 (LAI=1.904,0.651) and LCCI (LAI=1.904,0.448).
🔬Design:Modeling & Simulation
📍Scope:2013-2014 Verileri
⚙️Variables:Wheat · Hyperspectral data · indice

Abstract

Spectral Indices are frequently used in the estimation of green parts of plants, usually developed to reduce the spectral effects of external factors such as atmosphere and soil. The aim of this study was to evaluate the ability of different spectral indices to estimate chlorophyll in wheat according to phenological developmental stages and to calculate their optimal band combinations. In this study, chlorophyll-pigment related indices primarily used in chlorophyll estimation, as well as structural and red edge indices were used. Spectral reflectance values obtained for different phenological periods were correlated with SPAD (Minolta-502) values and Partial Least Square (PLS) model was used to calculate the prominent hyperspectral indices and their optimal band combinations. In this study, the responses and sensitivities of different spectral indices for chlorophyll estimation against LAI change in phenological periods were investigated. As a result, the indices that were least and most affected by saturation changes were revealed. Thus, the power of the indices to predict the chlorophyll content of the canopy was demonstrated. In chlorophyll estimation, NDVI (705,750) was the least affected by the saturation change due to the increasing LAI value in the early period and showed a high correlation (LAI= 2.63, R²= 0.554). This was followed by Red Edge (740-720), (LAI= 2.63,1.722), NDVI (550,780), (LAI= 2.63,0.733), SRPI (430,680) (LAI= 2.63,0.661), LCCI (705,750) (LAI= 2.63,0.554), and NPCI (430,680) (LAI= 2.63, 0.203). These indices, which showed high correlation in the early period, were in the range of R2=0.836-0.761. In Haymana in the late period between 2013-2014 (26 May,04-12-24 June 2014) LAI values vary between 0.63-3.38 and correlation values are between R2 =0.892-0.862. MSR (705,750) was the least affected by the saturation change due to the increasing LAI value in the late period and showed high correlation (LAI=1.904, 0.906). This was followed by NDVI670 (LAI=1.904,0.703), NDVI550 (LAI=1.904,0.651) and LCCI (LAI=1.904,0.448).

Özet

Spektral indeksler bitkide yeşil kısmın tahmin edilmesinde sıkça kullanılmaktadır. Bunlar genellikle atmosfer ve toprak gibi harici faktörlerin spektral etkilerini azaltmak için geliştirilmiştir. Bu çalışmanın amacı buğday’da fenolojik gelişim evrelerine göre farklı spektral indekslerin klorofil tahmin edebilme yeteneğini ortaya koymak ve bu indekslerin optimal band kombinasyonlarını hesaplamaktır. Çalışmada öncelikli olarak klorofil tahmininde kullanılan klorofl-pigment ilişkili indeksler ve bunun yanısıra strüktürel ve kırmızı kenar (Red Edge) indeksler kullanılmıştır. Farklı fenolojik dönemler için elde edilen spektral yansıma değerleri SPAD (Minolta-502) değerleri ile korelasyona tabi tutulmuş, öne çıkan hiperspektral indeksleri ve onların optimal band kombinasyonlarını hesaplamak için ise “En Küçük Kısmi Kareler toplamı” (PLS) modeli kullanılmıştır. Bu çalışmada, farklı Spektral İndekslerin klorofil tahmininde fenolojik dönemlerdeki LAI değişimine karşın, tepkileri ve hassasiyetleri incelenmiştir. Sonuçta saturasyon değişiminden en az ve fazla etkilenen indeksler ortaya çıkartılmıştır. Böylece indekslerin kanopinin klorofil kapsamını tahmin etme gücü ortaya konmuştur. Klorofil tahmininde erken dönemde artan LAI değerine bağlı olarak, saturasyon değişiminden en az etkilenen ve yüksek korelasyon gösteren indeks NDVI (705,750) ‘dir (LAI= 2.63, R²= 0.554). Bunu sırasıyla Red Edge (740-720), (LAI= 2.63,1.722), NDVI (550,780), (LAI= 2.63,0.733), SRPI (430,680) (LAI= 2.63,0.661), LCCI (705,750) (LAI= 2.63, 0.554) ve NPCI (430,680) (LAI= 2.63, 0.203) takip etmiştir. Erken dönemde yüksek korelasyon gösteren bu indeksler R2=0.836-0.761 korelasyon aralığında yer almıştır. Haymana 2013-2014 yılları arasında geç dönemde (26 Mayıs,04-12-24 Haziran 2014) LAI değerleri 0.63-3.38 arasında değişmekte korelasyon değerleri ise R2 =0.892-0.862 arasında yer almaktadır. Geç dönemde artan LAI değerine bağlı olarak saturasyon değişiminden en az etkilenen ve yüksek korelasyon gösteren indeks MSR(705,750)‘dir. (LAI=1.904, 0.906). Bunu sırasiyle NDVI670 (LAI=1.904,0.703), NDVI550 (LAI=1.904, 0.651) ve LCCI(705,750) (LAI=1.904, 0.448) takip etmiştir.

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Cite This Article

Aydoğdu, M., Yıldız, H. (2024). Use of Hyperspectral Data for Chlorophyll Estimation Based on Leaf Area Index (LAI) in Wheat. Türkiye Uzaktan Algılama Dergisi, Volume: 6 Issue: 2. https://doi.org/10.51489/tuzal.1555934

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References (56)

  1. Asrar G, Fuchs M, Kanemasu ET & Hatfield JL. (1984). Estimating absorbed photosynthetic radiation and leaf area index from spectral reflectance in wheat. Agron. J. 76:300–306. https://doi.org/10.2134/agronj1984.00021962007600020029x
  2. Başayiğit, L, Dinç, U., (2001). Toprak Etüd ve Haritalama Çalışmalarında Bilgisayar Teknolojilerinin Kullanımı, Tarımda Bilişim Teknolojileri 4. Sempozyumu,Sütçüimam Üniversitesi, Kahramanmaraş, s 283-291” kaynağından özetlenmiştir.
  3. Baret, F., Jacquemoud, S., Guyot, G., & Leprieur, C. (1992). Modeled analysis of the biophysical nature of spectral shifts and comparison with information content of broad bands. Remote Sensing of Environment, 41, 133– 142. https://doi.org/10.1016/0034-4257(92)90073-S
  4. Barraclough, P. B., & Kyle, J. (2001). Effect of water stress on chlorophyll meter readings in winter wheat. In W. J. Horst, et al. (Eds.), Plant nutrition-food security and sustainability of agro-ecosystems (pp. 722–723). Dordrecht, The Netherlands: Kluwer Academic Publishers. https://doi.org/10.1007/0-306-47624-X_350
  5. Blackburn, G. A. (1998a). Quantifying chlorophylls and carotenoids at leaf and canopy scales: An evaluation of some hyperspectral approaches. Remote Sensing of Environment, 66, 273–285. https://doi.org/10.1016/S0034-4257(98)00059-5
  6. Blackburn, G. A. (1998b). Spectral indices for estimating photosynthetic pigment concentrations: A test using senescent tree leaves. Interna tional Journal of Remote Sensing, 19, 657–675. https://doi.org/10.1080/014311698215919
  7. Broge, N. H., & Mortensen, J. V. (2002). Deriving green crop area index and canopy chlorophyll density of winter wheat from spectral reflec tance data. Remote Sensing of Environment, 81, 45–57. https://doi.org/10.1016/S0034-4257(01)00332-7
  8. Chaerle, L., & Van Der Straeten, D. (2000). Imaging techniques and the early detection of plant stress. Trends in plant science, 5(11), 495-501.
  9. Clevers, J. G., De Jong, S. M., Epema, G. F., Van Der Meer, F., Bakker, W. H., Skidmore, A. K., & Addink, E. A. (2001). MERIS and the red-edge position. International Journal of Applied Earth Observation and Geoinformation, 3(4), 313-320. https://doi.org/10.1016/S0303-2434(01)85038-8
  10. Collins, W. (1978). Remote sensing of crop type and maturity. Photogrammetric Engineering and Remote Sensing, 26, 43–55.
  11. Curran, P.J. (1989). Remote sensing of foliar chemistry. Remote Sens. Environ. 30:271-278. https://doi.org/10.1016/0034-4257(89)90069-2
  12. Dash, J., & Curran, P. J. (2004). The MERIS terrestrial chlorophyll index. https://doi.org/10.1080/0143116042000274015
  13. Delegido, J., Verrelst, J., Alonso, L., & Moreno, J. (2011). Evaluation of sentinel-2 red-edge bands for empirical estimation of green LAI and chlorophyll content. Sensors, 11(7), 7063-7081. https://doi.org/10.3390/s110707063
  14. Demetriades-Shah, T. H., Steven, M. D., & Clark, J. A. (1990). High resolution derivative spectra in remote sensing. Remote Sensing of Environment, 33, 55– 64. https://doi.org/10.1016/0034-4257(90)90055-Q
  15. Elvidge,C.D., & Z.Chen.(1995). Comparison of broad-band and near-infrared vegetation indices. Remote Sensing of Environment,54, pp. 38-48. https://doi.org/10.1016/0034-4257(95)00132-K
  16. Fava,F.,Colombo,R.,Bocchi,S.,Meroni,M.,Sitzia,M.,Fois,N.,et al.(2009). Identification of hyperspectral vegetation indices for Mediterranean pasture characterization. International Journal of Applied Earth Observation and Geoinformation, 11,233-243. https://doi.org/10.1016/j.jag.2009.02.003
  17. Feng,W.,Yao,X.,Zhu,Y.,Tian,Y.C., & Cao,W.X. (2008). Monitoring leaf nitrogen status with hyperspectral reflectance in wheat. Europe Journal of Agronomy, 28,394-404. https://doi.org/10.1016/j.eja.2007.11.005
  18. Filella, I., & Pen˜uelas, J. (1994). The red edge position and shape as indicators of plant chlorophyll content, biomass and hydric status. International Journal of Remote Sensing, 15, 1459– 1470.
  19. Filella, I., Serrano, L., Serra, J., & Penuelas, J. (1995). Evaluating wheat nitrogen status with canopy reflectance indices and discriminant analysis. Crop science, 35(5), 1400-1405. https://doi.org/10.1080/01431169408954177
  20. Fischer, R.A., (2001). Selection traits for ımproving yield potential: In Application of physiology in wheat breeding, Eds M.P. Reynolds, J.I. Ortiz-Monasterio, A. McNab., Mexico:CIMMYT p. 148-1159.
  21. Gitelson, A. and Merzlyak, M.N. 1994b. Spectral reflectance changes associate with autumn senescence of Aesculus hippocastanum L. and Acer platanoides L. leaves. Spectral features and relation to chlorophyll estimation. Journal of Plant Physiology, 143, 286-292.
  22. Gitelson A.A. & Merzylak, M. N. (1996). Signature analysis of leaf reflectance spectra: Algorithm development for remote sensing.J.Plant Physiol. 148:493-500. https://doi.org/10.1016/S0176-1617(96)80284-7
  23. Gitelson, A. A., Gritz, Y., % Merzlyak, M. N. (2003). Relationships between leaf chlorophyll content and spectral reflectance and algorithms for non-destructive chlorophyll assessment in higher plant leaves. Journal of plant physiology, 160(3), 271-282. https://doi.org/10.1078/0176-1617-00887
  24. Gitelson, A. A., Keydan, G. P., & Merzlyak, M. N. (2006). Three‐band model for noninvasive estimation of chlorophyll, carotenoids, and anthocyanin contents in higher plant leaves. Geophysical research letters, 33(11). https://doi.org/10.1029/2006GL026457
  25. Gupta, R.K., Vijayan, D. and Prasad, T.S. 2001. New hyperspectral vegetation characterization parameters, Advances in Space Research, 28(1), 201-206, https://doi.org/10.1016/S0273-1177(01)00346-5
  26. Haboudane,D.,j. R.Miller, N.Tremblay, P.J. Zarco-Tejada, & L. Dextraze (2002). Integrated narrow-band vegetation indices for prediction of crop chlorophyll content for application to precision agriculture. Remote Sensing of Environment 81 (2-3):416-426. https://doi.org/10.1016/S0034-4257(02)00018-4
  27. Haboudane, D.Tremblay, N., Miller, J.R. & Vigneault, P. (2008). Remote estimation of crop chlorophyll content using spetral indices derived from hyperspectral data. IEEE Transactions on Geoscience and Remote Sensing, 46, 423-437. https://doi.org/10.1109/TGRS.2007.904836
  28. Hansen, P. M., & Schjoerring, J. K. (2003). Reflectance measurement of canopy biomass and nitrogen status in wheat crops using normalized difference vegetation indices and partial least square regression. https://doi.org/10.1016/S0034-4257(03)00131-7
  29. Hatfield J.L., Gitelson,A.A., Scepers,j.s., & Walthall,C.L (2008). Application of spectral remote sensing for agronomic decisions. Agronomy Journal, 100, 117-131. https://doi.org/10.2134/agronj2006.0370c
  30. Herrmann, I., Pimstein, A., Karnieli, A., Cohen, Y., Alchanatis, V., & Bonfil, D. J. (2011). LAI assessment of wheat and potato crops by VENμS and Sentinel-2 bands. Remote Sensing of Environment, 115(8), 2141-2151.
  31. Jacobsen, A., K.B. Heidebrecht, A.A. Nielsen (1998): Monitoring Grasslands Using Convex Geometry and Partial Unmixing– a Case Study. Proceedings of 1st EARSel Workshop on Imaging Spectroscopy, Remote Sensing Laboratories, University of Zürich, Switzerland, 6-8 October. Eds. Michael Shaepman, Daniel Schläpfer, Klaus Itten. Pp. 309-316.
  32. Jensen A, Lorenzen B, Spelling-Ostergaard H & Kloster-Hvelplund E. (1990). Radiometric estimation of biomass and N content of barley grown at different N levels. Int. J. Remote Sens. 11:1809–1820. https://doi.org/10.1080/01431169008955131
  33. Maas, S. J., & Dunlap, J. R. (1989). Reflectance, transmittance, and absorptance of light by normal, etiolated, and albino corn leaves. Agronomy Journal, 81(1), 105-110. https://doi.org/10.2134/agronj1989.00021962008100010019x
  34. Martinez, D.E. & Guiamet, J.J., (2004). Distortion of SPAD 502 chlorophyll meter reading by changes in irradiance and leaf water status, INRA, EDP Sciences, Agronomie 24: 41-46. https://doi.org/ 10.1051/agro:2003060
  35. Mauser, W., & Bach, H. (1994). Imaging spectroscopy in hydrology and agriculture—determination of model parameters. In: J. Hill, & J. Megier (Eds.), Imaging spectrometry—a tool for environmental observations ( pp. 261–283). Dordrecht, The Netherlands: Kluwer Academic Publishing. https://doi.org/ 10.1007/978-0-585-33173-7_14
  36. Mıao,W. & Gastwırth, J. L (2009). A new two stage adaptive nonparametric test for paired difference. Statistics and Its Interface 2 213–221. MR2516072. https://dx.doi.org/10.4310/SII.2009.v2.n2.a11
  37. Minolta. (1989). SPAD-502 owner’s manual. Industrial Meter Div. Minolta Corp., Ramsey, N.J.
  38. Myneni, R. B., & Williams, D. L. (1994). On the relationship between FAPAR and NDVI. Remote Sensing of Environment, 49, 200– 211. https://doi.org/10.1016/0034-4257(94)90016-7
  39. Penuelas J, Gamon JA, Freeden A, Merino J & Field C (1994). Reflectance indices associated with physiological changes in N and water-limited sunflower leaves. Remote Sens. Environ. 46:100118. https://doi.org/10.1016/0034-4257(94)90136-8
  40. Penuelas, J., Filella, I., & Gamon, J. A. (1995). Assessment of photosyn thetic radiation-use efficiency with spectral reflectance. New Phytolo gist, 131, 291–296. https://doi.org/10.1111/j.1469-8137.1995.tb03064.x
  41. Peñuelas J., Baret F., Filella I. (1995a). Yaprak spektral yansımasından karotenoid klorofil-a oranını değerlendirmek için yarı deneysel endeksler. Photosynthetica 1995, 221–230. https://doi.org/10.1007/BF00029464.
  42. Peñuelas J., Filella I., Lloret P., Oz FM, Vilajeliu M. (1995b). Elma ağaçlarındaki akar etkilerinin yansıma değerlendirmesi. Int. J. Remote Sens. 16,2727–2733. https://doi.org/10.1080/01431169508954588
  43. Peñuelas, J., & Filella, I. (1998). Visible and near-infrared reflectance techniques for diagnosing plant physiological status. Trends in plant science, 3(4), 151-156. https://doi.org/10.1080/01431169508954588
  44. Roujean, J. L., & Breon, F. M. (1995). Estimating PAR absorbed by vegetation from bidirectional reflectance measurements. Remote Sensing of Environment, 51, Issue 3, 4257(94)00114-3. https://doi.org/10.1016/0034-4257(94)00114-3
  45. Serrano, L., Filella, I., & Penuelas, J. (2000). Remote sensing of biomass and yield of winter wheat under different nitrogen supplies. Crop Science, 40, 723–731. https://doi.org/10.2135/cropsci2000.403723x
  46. Smith RCG, Adams J., Stephens DJ ve Hick PT, NOAA uydusundan Akdeniz tipi bir ortamda buğday veriminin tahmini, Avustralya Tarım Araştırmaları Dergisi. ( 1995 ) 46, no. 1, 113 – 125,2-s2.0-0028971783, https://doi.org/10.1071/AR9950113.
  47. Thenkabail, P. S., Smith, R. B., & de Pauw, E. (2001). Hyperspectral vegetation indices and their relationships with agricultural crop charac teristics. Remote Sensing of Environment, 71, 158–182. https://doi.org/10.1016/S0034-4257(99)00067-X.
  48. Waldner, F., Fritz, S., Di Gregorio, A., & Defourny, P. (2015). Mapping priorities to focus cropland mapping activities: Fitness assessment of existing global, regional and national cropland maps. Remote Sensing, 7(6), 7959-7986. https://doi.org/10.3390/rs70607959.
  49. White, J. D., Trotter, C. M., Brown, L. J., & Scott, N. (2000). Nitrogen concentration in New Zealand vegetation foliage derived from labora tory and field spectrometry. International Journal of Remote Sensing, 21, 2525–2531. https://doi.org/10.1080/01431160050030628.
  50. Yadava, U.L., (1986). A rapid & nondestructive method to determine chlorophyll in intact leaves, HortScience 21:1449–1450.
  51. Yi-Hui, L. (2007). Evolutionary neural network modeling for forecasting the field failure data of repairable systems. Expert Systems with Applications, 33(4), 1090-1096. https://doi.org/10.1016/j.eswa.2006.08.032.
  52. Yoder, B. J., & Pettigrew-Crosby, R. E. (1995). Predicting nitrogen and chlorophyll content and concentrations from reflectance spectra (400 2500 nm) at leaf and canopy scales. Remote Sensing of Environment, 53, 199–211. https://doi.org/10.1016/0034-4257(95)00135-N
  53. Zarco-Tejada, P.J., Berjón, A., López-Lozano, R., Miller, J.R., Martín, P., Cachorro, V., González, M., De Frutos, A., 2005. Assessing vineyard condition with hyperspectral indices: Leaf and canopy reflectance simulation in a row-structured discontinuous canopy. Remote Sens. Environ. 99 (3), 271-287. https://doi.org/10.1016/j.rse.2005.09.002
  54. Peñuelas J., Baret F., Filella I. (1995a). Yaprak spektral yansımasından karotenoid klorofil-a oranını değerlendirmek için yarı deneysel endeksler. Photosynthetica 1995, 221–230. https://doi.org/10.1007/BF00029464.
  55. Peñuelas J., Filella I., Lloret P., Oz FM, Vilajeliu M. (1995b). Elma ağaçlarındaki akar etkilerinin yansıma değerlendirmesi. Int. J. Remote Sens. 16,2727–2733. https://doi.org/10.1080/01431169508954588
  56. Smith RCG, Adams J., Stephens DJ ve Hick PT, NOAA uydusundan Akdeniz tipi bir ortamda buğday veriminin tahmini, Avustralya Tarım Araştırmaları Dergisi. ( 1995 ) 46, no. 1, 113 – 125,2-s2.0-0028971783, https://doi.org/10.1071/AR9950113.