Journals / Gazi University Journal of Science / 2026 / Volume: 39 Issue: 3

Spectroscopic Characterization, DFT Analysis, Molecular Docking and ADMET Evaluation 1-(4-Methylpiperazin-1-ylmethyl)-3-p-chlorobenzyl-4-(4-hydroxybenzylideneamino)-4,5-dihydro-1H-1,2,4-triazol-5-one

Pages
—
Publication Date
2026-09-01
🏛️Bibliographic metadata and full text access for this article are provided via DergiPark.
DergiPark Record ↗
✨

AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

Lastly, the compound's pharmacokinetic properties were assessed using ADMET analysis, which highlighted the molecule's possible drug-like qualities by looking at factors like Lipinski's "rule of five," bioavailability, water solubility, gastrointestinal absorption, and blood-brain barrier permeability.

📌 3 Key Takeaways

🎯
Objective & Hypothesis:In this study, 1-(4-metilpiperazin-1-il-metil)-3- p -klorobenzil-4-(4-hidroksibenzilidenamino)-4,5-dihidro-1 H -1,2,4-triazol-5-on (PCHT), a Mannich base derived from 1,2,4-triazole, was synthesized and its structural properties were investigated using both experimental and theoretical methods.
📊
Key Findings & Data:Geometric optimization of the molecule was performed using Density Functional Theory (DFT) with B3LYP and B3PW91 functionals and the 6-31G(d,p) basis set.
💡
Conclusion & Impact:Lastly, the compound's pharmacokinetic properties were assessed using ADMET analysis, which highlighted the molecule's possible drug-like qualities by looking at factors like Lipinski's "rule of five," bioavailability, water solubility, gastrointestinal absorption, and blood-brain barrier permeability.
🔬Design:Modeling & Simulation
📍Scope:Comprehensive Sample
⚙️Variables:4-Triaole derivative · Mannich base · DFT calculations

Abstract

In this study, 1-(4-metilpiperazin-1-il-metil)-3- p -klorobenzil-4-(4-hidroksibenzilidenamino)-4,5-dihidro-1 H -1,2,4-triazol-5-on (PCHT), a Mannich base derived from 1,2,4-triazole, was synthesized and its structural properties were investigated using both experimental and theoretical methods. The structure of the compound was experimentally characterized by FT-IR, ¹H-NMR, and ¹³C-NMR spectroscopic techniques. Geometric optimization of the molecule was performed using Density Functional Theory (DFT) with B3LYP and B3PW91 functionals and the 6-31G(d,p) basis set. Theoretical vibrational frequencies and FT-IR, ¹H-NMR and ¹³C-NMR NMR isotropic chemical shift values were calculated via the GIAO method and compared with the experimental data. Furthermore, electronic parameters such as Mulliken atomic charges, HOMO–LUMO energy levels, energy gap (ΔEg), dipole moment, ionization potential, electron affinity, chemical hardness, chemical softness, and electronegativity were calculated. Molecular electrostatic potential (MEP) surface maps were generated to identify the reactive sites of the molecule, and nucleophilic and electrophilic regions were analyzed. In addition, Natural Bond Orbital (NBO) analysis was conducted to examine the electronic structure in more detail, evaluating donor–acceptor interactions and hyperconjugation effects. To investigate the biological activity potential, molecular docking studies were performed, and the binding energies and molecular interactions between the ligand and the target protein were examined. Lastly, the compound's pharmacokinetic properties were assessed using ADMET analysis, which highlighted the molecule's possible drug-like qualities by looking at factors like Lipinski's "rule of five," bioavailability, water solubility, gastrointestinal absorption, and blood-brain barrier permeability.

🔖

Cite This Article

Boy, S., Gören, K., Bağlan, M., Manap, S., Yüksek, H. (2026). Spectroscopic Characterization, DFT Analysis, Molecular Docking and ADMET Evaluation 1-(4-Methylpiperazin-1-ylmethyl)-3-p-chlorobenzyl-4-(4-hydroxybenzylideneamino)-4,5-dihydro-1H-1,2,4-triazol-5-one. Gazi University Journal of Science, Volume: 39 Issue: 3. https://doi.org/10.35378/gujs.1912609

📄 Full Text PDF Viewer

📄

PDF görüntüleyici hazırlanıyor...

References (39)

  1. Aktas-Yokus, O., Yuksek, H., Gursoy-Kol, O., and Alpay-Karaoglu S., “Synthesis and biological evaluation of new 1,2,4-triazole derivatives with their potentiometric titrations”, Medicinal Chemistry Research, 24(7): 2813–2824, (2015). DOI: https://doi.org/10.1007/s00044-015-1334-8
  2. Harmankaya, A., Medetalibeyoğlu, H., Atalay, A., Ortaakarsu, A. B., Manap, S., Koca, E., Yıldız, Ç., Köçek, N., and Yüksek H., “Synthesis, spectroscopic characterization, and multiscale computational investigation of a novel 1,2,4-triazole derivative targeting AChE, BChE, and COX enzymes”, Structural Chemistry, 37(2): 1011–1039, (2026). DOI: https://doi.org/10.1007/s11224-025-02610-7
  3. Medetalibeyoğlu, H., Türkan, F., Manap, S., Bursal, E., Beytur, M., Aras, A., Akyıldırım, O., Kotan, G., Gürsoy-Kol, Ö., and Yüksek H., “Synthesis and acetylcholinesterase enzyme inhibitory effects of some novel 4,5-dihydro-1H-1,2,4-triazol-5-one derivatives; an in-vitro and in-silico study”, Journal of Biomolecular Structure and Dynamics, 41(10): 4286–4294, (2023). DOI: https://doi.org/10.1080/07391102.2022.2066021
  4. Farghaly, T. A., Masaret, G. S., Riyadh, S. M., and Harras M. F., “A literature review focusing on the antiviral activity of [1,2,4] and [1,2,3]-triazoles”, Mini Reviews in Medicinal Chemistry, 24(17): 1602–1629, (2024). DOI: https://doi.org/10.2174/0113895575277122231108095511
  5. Dixit, D., Verma, P. K., and Marwaha R. K., “A review on ‘triazoles’: their chemistry, synthesis and pharmacological potentials”, Journal of the Iranian Chemical Society, 18(10): 2535–2565, (2021). DOI: https://doi.org/10.1007/s13738-021-02231-x
  6. Kabi, A. K., Sravani, S., Gujjarappa, R., Garg, A., Vodnala, N., Tyagi, U., Kaldhi, D., Singh, V., Gupta, S., and Malakar, C. C., “An overview on biological activities of 1,2,3-triazole derivatives”, Nanostructured Biomaterials: Basic Structures and Applications, Swain, B. P., Ed., Springer, Singapore, 401–423, 2022.
  7. Boy, S., Aras, A., Türkan, F., Akyıldırım, O., Beytur, M., Sedef Karaman, H., Manap, S., and Yüksek H., “Synthesis, spectroscopic analysis, and in-vitro/in-silico biological studies of novel piperidine derivatives heterocyclic schiff-mannich base compounds”, Chemistry & Biodiversity, 18(12): e2100433, (2021). DOI: https://doi.org/10.1002/cbdv.202100433
  8. Beytur, M., Turhan Irak, Z., Manap, S., and Yüksek H., “Synthesis, characterization and theoretical determination of corrosion inhibitor activities of some new 4,5-dihydro-1H-1,2,4-triazol-5-one derivatives”, Heliyon, 5(6): 2-5, (2019). DOI: https://doi.org/10.1016/j.heliyon.2019.
  9. Kotan, G., Gören, K., Manap, S., Bağlan, M., and Yüksek H., “Novel mannich bases based on schiff bases: synthesis, biological activities, computational approach, and anticancer analysis with molecular docking”, Acta Chimica Slovenica, 72(4): 637-653, (2025). DOI:https://doi.org/10.17344/acsi.2025.9285
  10. Gören, K., Kotan, G., Manap, S., and Yüksek H., “Synthesis, antimicrobial and antioxidant activities of 3-alkyl(aryl)-4-(3-methoxy-4-hydroxybenzylideneamino)-4,5-dihydro-1H-1,2,4-triazol-5-one derivatives”, Chemistry Africa, 7(10): 5273–5289, (2024). DOI: https://doi.org/10.1007/s42250-024-01139-2
  11. Tahiroğlu, V., Gören, K., Kotan, G., and Yüksek H., “In silico drug evaluation by molecular docking, ADME studies and synthesis, characterization, biological activities, DFT, SAR analysis of the novel mannich bases”, BMC Chemistry, 19(1): 249, (2025). DOI: https://doi.org/10.1186/s13065-025-01615-x
  12. Bağlan, M., Yıldıko, Ü., and Gören K., “DFT calculations and molecular docking study in 6-(2”-pyrrolidinone-5”-yl)-(-) epicatechin molecule from flavonoids”, Eskişehir Teknik Üniversitesi Bilim ve Teknoloji Dergisi B-Teorik Bilimler, 11(1): 43–55, (2023). DOI: https://doi.org/10.20290/estubtdb.1126604
  13. Tahiroğlu, V., Gören, K., and Bağlan M., “In silico drug evaluation by molecular docking, ADME studies and DFT calculations of 2-(6-chloro-2-(4-chlorophenyl)imidazo[1,2-a]pyridin-3-yl)-N,N-dipropylacetamide”, BMC Pharmacology and Toxicology, 26(1): 116, (2025). DOI: https://doi.org/10.1186/s40360-025-00958-4
  14. Gören, K., Bağlan, M., Tahiroğlu, V., and Yıldıko Ü., “Theoretical calculations and molecular docking analysis of 4-(2-(4-bromophenyl)hydrazineylidene)-3,5-diphenyl-4H-pyrazole molecule”, Journal of Advanced Research in Natural and Applied Sciences, 10(4): 786–802, (2024). DOI: https://doi.org/10.28979/jarnas.1516154
  15. Boy, S., Manap, S., and Yüksek H., “Synthesis studies of some new mannich bases derived from 1,2,4-triazoles”, In: Proceedings of the 4th International Conference on Scientific Researches, Mexico. (2022), p. 552–557.
  16. G.W.T. M.J. Frisch, H. B. S., G.E. Scuseria, M.A. Robb, J.R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G.A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H.P. Hratchian, A.F. Izmaylov, J. Bloino, G. Zheng, J.L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J.A. Montgomery Jr., J.E. Peralta, F. Ogliaro, M. Bearpark, J.J. Heyd, E. Brothers, K.N. Kudin, V.N. Staroverov, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J.C. Burant, S.S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J.M. Millam, M. Klene, J.E. Knox, J.B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R.E. Stratmann, O. Yazyev, A.J. Austin, R. Cammi, C. Pomelli, J.W. Ochterski, R.L. Martin, K. Morokuma, V.G. Zakrzewski, G.A. Voth, P. Salvador, J.J. Dannenberg, S. Dapprich, A.D. Daniels, Ö. Farkas, J.B. Foresman, J.V. Ortiz, J. Cioslowski, D.J. Fox, “Gaussian 09”, Revision D.01, Gaussian, Inc., Wallingford, CT, USA, 2009
  17. Eberhardt, J., Santos-Martins, D., Tillack, A. F., and Forli S., “AutoDock Vina 1.2.0: new docking methods, expanded force field, and python bindings”, Journal of chemical information and modeling, 61(8): 3891–3898, (2021). DOI: https://doi.org/10.1021/acs.jcim.1c00203
  18. Protein Data Bank (PDB). “Structure of the epidermal growth factor receptor kinase domain alone and in complex with a 4-anilinoquinazoline inhibitor”. 2002 Accessed March 14, 2026, https://www.rcsb.org/structure/1M17
  19. Protein Data Bank (PDB). “Solution structure of the anti-apoptotic protein Bcl-2 in complex with an acyl-sulfonamide-based ligand”. 2007 Accessed March 14, 2026, https://www.rcsb.org/structure/2O2F
  20. BIOVIA, Dassault Systèmes., “Discovery Studio Visualizer”, in dassault systèmes, C. San Diego, USA, Editor. 2016.
  21. ADMETlab 2.0. “A platform for systematic ADMET evaluation”. Accessed March 14, 2026, https://admetmesh.scbdd.com/
  22. Chemical Computing Group ULC, “Molecular Operating Environment (MOE)”, Version 2022.09, Chemical Computing Group ULC, Montreal, QC, Canada, 2022.
  23. Bansal, R., Inwati, G. K., Sharma, P., Kumar, A., and Bharti R., “Density functional theory (DFT), ADME, molecular docking and molecular dynamics simulations of synthesized 1,2,3,4-tetrahydropyrimidine derivatives”, Catalysis Letters, 156(4): 88, (2026). DOI: https://doi.org/10.1007/s10562-026-05306-7
  24. Alheety, N. F., Al-Kubaisi, A. A., Aldahham, B. J. M., Awad, S. A., Raouafi, N., Alheety, M. A., and Besbes R., “Integrated DFT, molecular docking, and in silico ADME analysis of new benzimidazole derivatives as promising anticancer candidates targeting MCF-7 cells”, Chemistry & Biodiversity, 23(2): e03385, (2026). DOI: https://doi.org/10.1002/cbdv.202503385
  25. Bağlan, M., Gören, K., Tahiroğlu, V., Kotan, G., Manap, S., and Yüksek H., “Design, synthesis, DFT-based characterization, molecular docking, and ADMET evaluation of a novel mannich base derivative”, ChemistrySelect, 11(9): e06617, (2026). DOI: https://doi.org/10.1002/slct.202506617
  26. Hratchian, H. P., Parandekar, P. V., Raghavachari, K., Frisch, M. J., and Vreven T., “QM: QM electronic embedding using mulliken atomic charges: Energies and analytic gradients in an ONIOM framework”, The Journal of Chemical Physics, 128(3): 034107 (2008). DOI: https://doi.org/10.1063/1.2814164
  27. Enbaraj, E., Ramakrishnan, E., Avula, B., Al-Lohedan, H., Rajabathar, J. R., Manikandan, H., Raja, A., Mukherjee, A., Ayyaru, S., Ahn, Y.-H., and Balu K., “New phenone-tetrazole derivatives: Synthesis, spectroscopic characterization, crystallography, and DFT insights”, Journal of Molecular Structure, 1364: 145886, (2026). DOI: https://doi.org/10.1016/j.molstruc.2026.145886
  28. Choudhary, V., Bhatt, A., Dash, D., and Sharma N., “DFT calculations on molecular structures, HOMO–LUMO study, reactivity descriptors and spectral analyses of newly synthesized diorganotin (IV) 2-chloridophenylacetohydroxamate complexes”, Journal of Computational Chemistry, 40(27): 2354–2363, (2019). DOI: https://doi.org/10.1002/jcc.26012
  29. Rocha, M., Di Santo, A., Arias, J. M., Gil, D. M., and Altabef A. B., “Ab-initio and DFT calculations on molecular structure, NBO, HOMO–LUMO study and a new vibrational analysis of 4-(dimethylamino) benzaldehyde”, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 136: 635–643, (2015). DOI: https://doi.org/10.1016/j.saa.2014.09.077
  30. Karabacak, M., Bilgili, S., and Atac A., “Molecular structure, spectroscopic characterization, HOMO and LUMO analysis of 3,3′-diaminobenzidine with DFT quantum chemical calculations”, Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, 150: 83–93, (2015). DOI: https://doi.org/10.1016/j.saa.2015.05.013
  31. Ganiev, B., Mardonov, U., and Kholikova G., “Molecular structure, HOMO-LUMO, MEP analysis of triazine compounds using DFT (B3LYP) calculations”, Materials Today: Proceedings, 95: 632-638, (2023). DOI: https://doi.org/10.1016/j.matpr.2023.09.191
  32. Lakshminarayanan, S., Jeyasingh, V., Murugesan, K., Selvapalam, N., and Dass G., “Molecular electrostatic potential (MEP) surface analysis of chemo sensors: An extra supporting hand for strength, selectivity & non-traditional interactions”, Journal of Photochemistry and Photobiology, 6: 100022, (2021). DOI: https://doi.org/10.1016/j.jpap.2021.100022
  33. Ghanavatkar, C. W., Mishra, V. R., Sharma, S., Mathew, E., Chitrambalam, S., Joe, I. H., and Nethi S. N., “Red emitting hydroxybenzazole (HBX) based azo dyes: Linear and non linear optical properties, optical limiting, Z scan analysis with DFT assessments”, Journal of Fluorescence, 30(2): 335–346, (2020). DOI: https://doi.org/10.1007/s10895-020-02493-3
  34. Moustafa, H., Mohamed, G. G., and Elramly S., “Spectroscopic studies, density functional theory calculations, and non-linear optical properties of binuclear Fe(III), Co(II), Ni(II), Cu(II), and Zn(II) complexes of OONN schiff base ligand”, Journal of the Chinese Chemical Society, 67(10): 1783–1793, (2020). DOI: https://doi.org/10.1002/jccs.202000024
  35. Sakr, M. A. S., Sherbiny, F. F., and El-Etrawy A.-A. S., “Hydrazone-based materials; DFT, TD-DFT, NBO analysis, fukui function, MESP analysis, and solar cell applications”, Journal of Fluorescence, 32(5): 1857–1871, (2022). DOI: https://doi.org/10.1007/s10895-022-03000-6
  36. Erdogdu, Y., Unsalan, O., Amalanathan, M., and Hubert Joe I., “Infrared and raman spectra, vibrational assignment, NBO analysis and DFT calculations of 6-aminoflavone”, Journal of Molecular Structure, 980(1): 24–30, (2010). DOI: https://doi.org/10.1016/j.molstruc.2010.06.032
  37. Ahmad, S., Kumar, M., Garima, K., Ali, A., Arora, H., Muthu, S., and Javed S., “DFT, molecular docking, molecular dynamics simulation, and hirshfeld surface analysis of 2-phenylthioaniline”, polycyclic aromatic compounds, 44(9): 5876–5898, (2024). DOI: https://doi.org/10.1080/10406638.2023.2270128
  38. Vijayakumar, V., Prabakaran, A., Radhakrishnan, N., Muthu, S., Rameshkumar, C., and Isac Paulraj E., “Synthesis, characterization, spectroscopic studies, DFT and molecular docking analysis of N4, N4′-dibutyl-3,3′-diaminobenzidine”, Journal of Molecular Structure, 1179: 325–335, (2019). DOI: https://doi.org/10.1016/j.molstruc.2018.11.018
  39. Samuel, Y., Garg, A., and Mulugeta E., “Synthesis, DFT analysis, and evaluation of antibacterial and antioxidant activities of sulfathiazole derivatives combined with in silico molecular docking and ADMET predictions”, Biochemistry Research International, 2021(1): 7534561, (2021). DOI: https://doi.org/10.1155/2021/7534561