Journals / Yüzüncü Yıl Üniversitesi Tarım Bilimleri Dergisi / 2026 / Issue: 1

Analysis of 3`-Terminal Region and Mechanical Transmission of Yambean Mosaic Virus Isolates Infecting Clitoria ternatea in Indonesia

Rossa Wulandari(Universitas Gadjah Mada)0009-0008-6029-6524
Firza Nabil Abrar(Universitas Gadjah Mada)0009-0001-2569-8391
Rivaldi Pratama(Universitas Gadjah Mada)0009-0002-9713-6846
Filiz Randa Zelyüt(BILECIK SEYH EDEBALI UNIVERSITY)0000-0002-1366-4389
Pages
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Publication Date
2026-03-17
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AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

This study reported the first cases of YBMV in butterfly pea in Indonesia, while also enriching our understanding of the genetic diversity of the virus.

📌 3 Key Takeaways

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Objective & Hypothesis:Among potyviruses infecting legumes, yambean mosaic virus (YBMV, Potyvirus pachyrhizus) is still less studied.
📊
Key Findings & Data:PX398571-PX398575) were grouped closer to a butterfly pea isolate from Thailand (MJU-L1, PQ238432) than to another Indonesian isolate from yam bean (Pachyrhizus erosus) (Bogor, AB289438) in the constructed phylogenetic trees.
💡
Conclusion & Impact:This study reported the first cases of YBMV in butterfly pea in Indonesia, while also enriching our understanding of the genetic diversity of the virus.
🔬Design:Research Article
📍Scope:Comprehensive Sample
⚙️Variables:Fabaceae · Percentage identity · Phylogenetic analysis

Abstract

Among potyviruses infecting legumes, yambean mosaic virus (YBMV, Potyvirus pachyrhizus) is still less studied. A recent finding in Thailand expanded the virus host range to include butterfly pea (Clitoria ternatea). Leaves of butterfly pea plants in several spots in the Special Region of Yogyakarta, Indonesia, also exhibited systemic mosaic, chlorosis, and malformation, typical of a viral disease. Four symptomatic leaf samples were collected from Bantul Regency, and another one in Sleman Regency, along with non-symptomatic samples. Samples were tested using by RT-PCR with universal potyvirus primers and specific primers for bean common mosaic virus (BCMV, Potyvirus phaseovulgaris) and cucumber mosaic virus (CMV, Cucumovirus CMV), respectively. Results of RT-PCR and BLAST analyses of the obtained DNA sequences indicated that the five symptomatic samples were infected by with YBMV. Meanwhile, two other widespread legume viruses, BCMV and CMV, were not detected. Subsequently, the two non-symptomatic samples tested negative for the three viruses. The five new Indonesian isolates (acc. nos. PX398571-PX398575) were grouped closer to a butterfly pea isolate from Thailand (MJU-L1, PQ238432) than to another Indonesian isolate from yam bean (Pachyrhizus erosus) (Bogor, AB289438) in the constructed phylogenetic trees. The isolate from Sleman (SMN-00) was mechanically transmitted to yardlong bean (Vigna unguiculata ssp. sesquipedalis), but not to cucumber (Cucumis sativus) and chili pepper (Capsicum annuum). This study reported the first cases of YBMV in butterfly pea in Indonesia, while also enriching our understanding of the genetic diversity of the virus.

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Cite This Article

Wida, F. R. C., Wulandari, R., Vadilah, M. N., Abrar, F. N., Karamah, A. T., Rasjman, N. M. S., Pratama, R., Zelyüt, F. R., Santosa, A. I. (2026). Analysis of 3`-Terminal Region and Mechanical Transmission of Yambean Mosaic Virus Isolates Infecting Clitoria ternatea in Indonesia. Yüzüncü Yıl Üniversitesi Tarım Bilimleri Dergisi, Issue: 1. https://doi.org/10.29133/yyutbd.1802404

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References (32)

  1. Acharya, V., Arutselvan, R., Pati, K., Rout, A. K., Dehury, B., Chauhan, V. B. S., & Nedunchezhiyan, M. (2022). Structural insights into the RNA interaction with yam bean mosaic virus (coat protein) from Pachyrhizus erosus using bioinformatics approach. PLOS One, 17(7), 1–25. https://doi.org/10.1371/journal.pone.0270534
  2. Adak, E., Demirezen, S., Karaman, E. Y., Gündoğmuş, B., Yeken, M., Morca, A. F., Güler, E., Yeken, M. Z., Santosa, A. I., Achs, A., Glasa, M., & Çelik, A. (2026). Contrasting antioxidant and metabolic responses of resistant and susceptible common bean varieties to bean common mosaic virus (BCMV) infection. Journal of Phytopathology, 174(2), e70273. https://doi.org/10.1111/jph.70273
  3. Adisakwattana, S., Pasukamonset, P., & Chusak, C. (2020). Clitoria ternatea beverages and antioxidant usage. In P. R. Preedy (Ed.), Pathology: Oxidative stress and dietary antioxidants (pp. 189–196). Academic Press. https://doi.org/10.1016/B978-0-12-815972-9.00018-4
  4. Cascardo, D. Z. R., Pires, L. L., Leal, L. L., Lima, M. F., Zerbini, F. M., & Alfenas-Zerbini, P. (2021). Complete genome sequence of a recombinant isolate of yambean mosaic virus from Canavalia ensiformis. Virus Genes, 57(5), 561–564. https://doi.org/10.1007/s11262-021-01864-7
  5. Chiquito-Almanza, E., Acosta-Gallegos, J. A., García-Álvarez, N. C., Garrido-Ramírez, E. R., Montero-Tavera, V., Guevara-Olvera, L., & Anaya-López, J. L. (2017). Simultaneous detection of both RNA and DNA viruses infecting dry bean and occurrence of mixed infections by BGYMV, BCMV and BCMNV in the Central-West Region of Mexico. Viruses, 9(4), 63. https://doi.org/10.3390/v9040063
  6. Çelik, A., Morca, A. F., Coşkan, S., & Santosa, A. I. (2023). Global population structure of apple mosaic virus (ApMV, Genus Ilarvirus). Viruses, 15(6), 1221. https://doi.org/10.3390/v15061221
  7. Damayanti, T. A., Susilo, D., Nurlaelah, S., Sartiami, D., Okuno, T., & Mise, K. (2008). First report of bean common mosaic virus in yam bean [Pachyrhizus erosus (L.) Urban] in Indonesia. Journal of General Plant Pathology, 74, 438–442. https://doi.org/10.1007/s10327-008-0122-4
  8. de Blas, C., Borja, M. J., Saiz, M., & Romero, J. (1994). Broad spectrum detection of cucumber mosaic virus (CMV) using the polymerase chain reaction. Journal of Phytopathology, 141(3), 323–329. https://doi.org/10.1111/j.1439-0434.1994.tb01476.x
  9. de Sá Andrade Medeiros, L., de Oliveira, I. A., Pires, L. L., Kitajima, E. W., da Silva, G. S., & Beserra Jr, J. E. A. (2019). First report of yambean mosaic virus in Brazil. Australasian Plant Disease Notes, 14(1), 22. https://doi.org/10.1007/s13314-019-0349-2
  10. Ekpiken, E. E., Eyong, O. I., Adediji, A. O., Mofunanya, A. J., Arogundade, O., & Owolabi, A. T. (2023). Detection of a new strain of the yambean mosaic virus in Senna hirsuta (Irwin and Barneby) in Calabar, Southern Nigeria. Indian Journal of Agricultural Research, 45, 67–79. https://doi.org/10.18805/IJARe.A-636
  11. Faradilla, P., Mumtaz, A. N., Azzahra, N., Purba, R. A. S., Zega, S., Zahira, T., & Ramadhan, D. S. (2025). Production of natural dye from butterfly pea flower (Clitoria ternatea T.) extract using citric acid solvent from bilimbi (Averrhoa bilimbi). Indonesian Journal of Chemical Science and Technology (IJCST), 8(2), 174–179. https://doi.org/10.24114/ijcst.v8i2.68738
  12. Filardo, F., Waterhouse, B., Jones, L., & Campbell, P. (2023). Yambean mosaic virus and lettuce chlorosis virus in Australia. Australasian Plant Disease Notes, 18(1), 1–4. https://doi.org/10.1007/s13314-023-00495-1
  13. Fuentes, S., Heider, B., Tasso, R. C., Romero, E., zum Felde, T., & Kreuze, J. F. (2012). Complete genome sequence of a potyvirus infecting yam beans (Pachyrhizus spp.) in Peru. Archives of Virology, 157(4), 773–776. https://doi.org/10.1007/s00705-011-1214-6
  14. Ha, C., Revill, P., Harding, R. M., Vu, M., & Dale, J. L. (2008). Identification and sequence analysis of potyviruses infecting crops in Vietnam. Archives of Virology, 153(1), 45–60. https://doi.org/10.1007/s00705-007-1067-1
  15. Ibrahim, A. S., Usta, M., & Şensoy, S. (2023). Screening of bean genotypes against bean common mosaic virus (BCMV) by artificial ınoculation and molecular confirmation. Yuzuncu Yıl University Journal of Agricultural Sciences, 33(4), 592–604. https://doi.org/10.29133/yyutbd.1296560
  16. Inoue-Nagata, A. K., Jordan, R., Kreuze, J., Li, F., Lopez-Moya, J. J., Mäkinen, K., Ohshima, K., Wylie, S. J., & ICTV Report Consortium. (2022). ICTV virus taxonomy profile: Potyviridae 2022. Journal of General Virology, 103(7), 001738. https://doi.org/10.1099/jgv.0.001738
  17. Jenjai, K., & Samarakoon, M. C. (2025). First report of yambean mosaic virus infection in butterfly pea (Clitoria ternatea) in Thailand. Journal of General Plant Pathology, 91, 121–125. https://doi.org/10.1007/s10327-024-01213-0
  18. Khaled-Gasmi, W., Souissi, R., & Boukhris-Bouhachem, S. (2022). Cucumber mosaic virus epidemiology in pepper: Aphid dispersal, transmission efficiency and vector pressure. Annals of Applied Biology, 182(1), 101–111. https://doi.org/10.1111/aab.12798
  19. Langeveld, S. A., Dore, J.-M., Memelink, J., Derks, A. F. L. M., van der Vlugt, C. I. M., Asjes, C. J., & Bol, J. F. (1991). Identification of potyviruses using the polymerase chain reaction with degenerate primers. Journal of General Virology, 72(7), 1531–1541. https://doi.org/10.1099/0022-1317-72-7-1531
  20. Martin, D. P., Varsani, A., Roumagnac, P., Botha, G., Maslamoney, S., Schwab, T., Kelz, Z., Kumar, V., & Murrell, B. (2021). RDP5: A computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets. Virus Evolution, 7(1), veaa087. https://doi.org/10.1093/ve/veaa087
  21. Melinda., Damayanti, T. A., & Hidayat, S. H. (2015). Identifikasi molekuler bean common mosaic virus yang berasosiasi dengan penyakit mosaik kuning kacang panjang. Journal of Tropical Plant Pests and Diseases, 15(2), 132–140. https://doi.org/10.23960/j.hptt.215132-140
  22. Muhire, B. M., Varsani, A., & Martin, D. P. (2014). SDT: A virus classification tool based on pairwise sequence alignment and identity calculation. PLOS One, 9(9), e108277. https://doi.org/10.1371/journal.pone.0108277
  23. Oguis, G. K., Gilding, E. K., Jackson, M. A., & Craik, D. J. (2019). Butterfly pea (Clitoria ternatea), a cyclotide-bearing plant with applications in agriculture and medicine. Frontiers in Plant Science, 10, 645. https://doi.org/10.3389/fpls.2019.00645
  24. Puspitojati, E. (2024). The potential of telang flower (Clitoria ternatea) in functional food diversification in Indonesia. Jurnal Ilmu-Ilmu Pertanian, 31(2), 79–85. https://doi.org/10.55259/jiip.v31i1.36
  25. Rahayu, E., Indrianingsih, A. W., Nisa, K., Fitrotin, U., Handayani, S., Khamidah, A., Hastuti, H. P., Suryani, A. I., Darsih, C., Apriyati, E., Ni’maturrohmah, D., Marzuki, S. U., Wiyono, T., Hastuti, M., & Widuri, N. R. (2025). Latest update of Clitoria ternatea research for nutraceuticals: A bibliometric analysis (2003–2022). Vegetos. https://doi.org/10.1007/s42535-025-01334-7
  26. Rahim, Y. R., Damayanti, T. A., & Ghulamahdi, M. (2020). Respons varietas kedelai unggul terhadap cucumber mosaic virus strain Soybean (CMV-S). Buletin Palawija, 18(2), 105–112. https://doi.org/10.21082/bulpa.v18n2.2020.p105-112
  27. Sastry, K. S., Mandal, B., Hammond, J., Scott, S. W., & Briddon, R. W. (2019). Pachyrhizus spp. (Yam bean). In K. S. Sastry, B. Mandal, J. Hammond, S. W. Scott, & R. W. Briddon (Eds.), Encyclopedia of plant viruses and viroids (pp. 1707–1708). Springer. https://doi.org/10.1007/978-81-322-3912-3_648
  28. Sultana, S., Roy, B., & Sherpa, A. R. (2019). Natural occurrence of papaya ringspot virus in Clitoria ternatea in India. Journal of Plant Pathology, 101, 183. https://doi.org/10.1007/s42161-018-0128-5
  29. Tamura, K. (1992). Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G + C-content biases. Molecular Biology and Evolution, 9(4), 678–687. https://doi.org/10.1093/oxfordjournals.molbev.a040752
  30. Tamura, K., Stecher, G., & Kumar, S. (2021). MEGA11: Molecular Evolutionary Genetics Analysis version 11. Molecular Biology and Evolution, 38(7), 3022–3027. https://doi.org/10.1093/molbev/msab120
  31. Wei, K., Gibbs, A., & Mackenzie, A. (2012). Clitoria yellow mottle virus: A tobamovirus from Northern Australia. Australasian Plant Disease Notes, 7, 59–61. https://doi.org/10.1007/s13314-012-0048-8
  32. Zahra, H. A., Defitra, N. K., Probowati, W., Randa-Zelyüt, F., & Santosa, A. I. (2024). First report of cucumber mosaic virus in Zinnia elegans in Indonesia. Australasian Plant Disease Notes, 19, 27. https://doi.org/10.1007/s13314-024-00551-4