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Journals / Harran Üniversitesi Tıp Fakültesi Dergisi / 2026 / Cilt: 23 Sayı: 3

Copy Number Variant Findings in Individuals with Neurodevelopmental Disorders

Nörogelişimsel Bozukluğu Olan Bireylerde Kopya Sayısı Değişikliği Bulguları

Mehmet Burak Mutlu(Detagen Genetik Hastalıklar Değerlendirme Merkezi)0000-0001-7745-8165
Çağrı Doğan(ORDU ÜNİVERSİTESİ, TIP FAKÜLTESİ, DAHİLİ TIP BİLİMLERİ BÖLÜMÜ, TIBBİ GENETİK ANABİLİM DALI)0000-0001-5068-0380
Pages
459–468
Publication Date
2026-09-21
DOI
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AI Summary & Key Takeaways

AI Insight
⚡ TL;DR(Too Long; Didn't Read)

Overall, 74 CNVs were classified as pathogenic, 10 as likely pathogenic, and 49 as variants of uncertain significance.

📌 3 Key Takeaways

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Objective & Hypothesis:Background: Chromosomal microarray analysis (CMA) is widely used as a first-tier test in individuals with unexplained neurodevelopmental disorders (NDDs).
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Key Findings & Data:Materials and Methods: This retrospective, two-center study included 517 individuals referred for CMA between January 2023 and January 2026 because of developmental delay, intellectual disability, autism spectrum disorder or attention-deficit/hyperactivity disorder, with or without congenital anomalies.
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Conclusion & Impact:Overall, 74 CNVs were classified as pathogenic, 10 as likely pathogenic, and 49 as variants of uncertain significance.
🔬Design:Araştırma Makalesi
📍Scope:2023 Verileri
⚙️Variables:Kromozomal mikrodizin analizi · Kopya sayısı değişikliği · Nörogelişimsel bozukluklar

Abstract

Background: Chromosomal microarray analysis (CMA) is widely used as a first-tier test in individuals with unexplained neurodevelopmental disorders (NDDs). This study aimed to evaluate the diagnostic contribution of CMA in a Turkish cohort referred for the evaluation of neurodevelopmental phenotypes. Materials and Methods: This retrospective, two-center study included 517 individuals referred for CMA between January 2023 and January 2026 because of developmental delay, intellectual disability, autism spectrum disorder or attention-deficit/hyperactivity disorder, with or without congenital anomalies. Copy-number variants (CNVs) were classified according to ACMG/ClinGen criteria. Results: The cohort included 289 males and 228 females. Reportable CNVs were identified in 111 individuals (21.5%). Overall, 74 CNVs were classified as pathogenic, 10 as likely pathogenic, and 49 as variants of uncertain significance. At least one pathogenic or likely pathogenic CNV was detected in 67 individuals, corresponding to a diagnostic yield of 13%. Deletions were more frequent than duplications among identified CNVs. Multiple CNVs were observed in 19 individuals. Conclusions: CMA yielded a clinically relevant molecular diagnosis in approximately one in eight referred individuals. These findings support the continued use of CMA in the routine diagnostic evaluation of NDDs, particularly when interpreted together with phenotype, gene content, inheritance, and complementary cytogenetic or sequencing-based data.

Özet

Amaç: Kromozomal mikrodizin analizi (CMA), nedeni açıklanamayan nörogelişimsel bozukluklarda (NDDs) birinci basamak genetik testlerden biridir. Bu çalışmada, nörogelişimsel fenotipler nedeniyle CMA istenen Türk bireylerde yöntemin tanısal katkısının değerlendirilmesi amaçlandı. Materyal ve metod: Bu retrospektif iki merkezli çalışmaya, Ocak 2023-Ocak 2026 tarihleri arasında gelişimsel gecikme, entelektüel yetersizlik, otizm spektrum bozukluğu, dikkat eksikliği/hiperaktivite bozukluğu ve eşlik eden konjenital anomaliler nedeniyle CMA yapılan 517 birey dahil edildi. Kopya sayısı değişiklikleri (CNV), ACMG/ClinGen kriterlerine göre sınıflandırıldı. Bulgular: Kohort 289 erkek ve 228 kadın bireyden oluşmaktaydı. Raporlanabilir CNV’ler, 111 bireyde (yaklaşık %21,5) saptandı. Toplamda 74 CNV patojenik, 10 CNV muhtemel patojenik ve 49 CNV klinik anlamı belirsiz varyant olarak sınıflandırıldı. En az bir patojenik veya muhtemel patojenik CNV, 67 bireyde saptandı ve tanısal verim yaklaşık %13 olarak hesaplandı. Delesyonlar, tüm CNV’ler arasında duplikasyonlardan daha sıktı. On dokuz bireyde birden fazla CNV saptandı. Sonuç: CMA, yönlendirilen yaklaşık her sekiz bireyden birinde klinik açıdan anlamlı moleküler tanı sağlamıştır. Bulgularımız, CMA’nın NDDs'nin rutin tanısal değerlendirmesinde kullanılmasını desteklemektedir; ancak yorumlama fenotip, gen içeriği, kalıtım durumu ve gerektiğinde tamamlayıcı sitogenetik veya sekanslama verileri ile birlikte yapılmalıdır.

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Cite This Article

Mutlu, M. B., Doğan, Ç., *, M. B. M. (2026). Copy Number Variant Findings in Individuals with Neurodevelopmental Disorders. Harran Üniversitesi Tıp Fakültesi Dergisi, Cilt: 23 Sayı: 3, 459–468. https://ajindex.com/articles/1080787

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